PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10014219m
Common NameCICLE_v10014219mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 887aa    MW: 97142.2 Da    PI: 7.5735
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10014219mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3581.7e-18337436198
                      EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d++g++W +++++  +++s++yvl+ G     +  +L++gD+v+F++ +  e+
  Ciclev10014219m 337 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDSKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDIVTFSRLE-PEG 428
                      89**************************555566778***************9989999999***9.********************766.777 PP

                      ..EEEEE- CS
               B3  91 elvvkvfr 98 
                      +lv+++++
  Ciclev10014219m 429 KLVMGFRK 436
                      77777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS0135903693IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:2.40.330.107.1E-31333443IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-19334436IPR015300DNA-binding pseudobarrel domain
CDDcd100176.19E-22335436No hitNo description
PROSITE profilePS5086311.293337438IPR003340B3 DNA binding domain
SMARTSM010191.0E-19337438IPR003340B3 DNA binding domain
PfamPF023627.5E-16337436IPR003340B3 DNA binding domain
PROSITE profilePS5105013.697565615IPR011124Zinc finger, CW-type
PfamPF074967.0E-11570612IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 887 aa     Download sequence    Send to blast
MSSSSKICFN KECKELKSER PRKGWLLRGG EFAELCDRCG SIYEEGRFCD TFHVNASGWR  60
CCESCGKRVH CGCITSVHAF TLLDAGGIEC MTCARKNVLV APTPSWPPSL FYQTPFPERI  120
KDLSVKNWTQ LAGSGPVPWR QAPSLFNSSI PQPELRPRLP YEVDLSAGID RINASERLSV  180
PSLEKRKLED FSERLMNGGL KSGSRDIPEN ANAGSNCDMQ PSSCLNKPQQ SSTLKDDSST  240
PHFGLAVSYA SPSETNSQIG VSGSHLRPVV QPPLVKQFHG NLPNGADSLG ETQVRNGRPR  300
VDARGRSQLL PRYWPRFTDQ DLQQISGDSN SVITPLFEKM LSASDAGRIG RLVLPKKCAE  360
AYFPPISQPE GLPLKVQDSK GKEWIFQFRF WPNNNSRMYV LEGVTPCIQN MQLQAGDIVT  420
FSRLEPEGKL VMGFRKASSA SASDQDNEAN KAGTGIPANG HAELADPSSW SKVDKSGYIA  480
TEALGAKSSI SRKRKNTTLG SKSKRLKIEN EDVIELKLTW EEAQGLLRPP PNNVPSVVVI  540
EGYEFEEYED APILGKPTIF ATDNVGEKIQ WVQCEDCSKW RKVPANARLP SKWTCSGNLW  600
DPERSVCSAA QELREEQLED LIAPNNPASS KKLKTAKQEP DCVEALEGLD TLANLAILGE  660
GEGLTASSQA TTKHPRHRPG CSCIVCIQPP SGKGPKHKQT CTCNVCLTVK RRFHTLMLRR  720
EKKQSEKDAE TSRKKQQQQK LPVPEKSADD DPLSCSKTGN NSPNEKKVVS EGSDDDSSRI  780
KSSTSPFKGQ IDLNIQPERE EELSPGSDSG SMIRLLQDAT EKYLRQQRLS SSGVNTSSVE  840
NEGLQGGVTG EKISNGITLD GSHQDTDEDH HGSLSVKASA SISATG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A4e-643154402127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1492506KRKNTTLGSKSKRLK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.199460.0flower| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR4920701e-127KR492070.1 UNVERIFIED: Citrus sinensis clone 114-1c mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006449227.10.0B3 domain-containing protein Os07g0563300 isoform X1
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLV4U9070.0V4U907_9ROSI; Uncharacterized protein
STRINGXP_006449227.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68572536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.11e-178high-level expression of sugar-inducible gene 2