PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10014485m
Common NameCICLE_v10014485mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 687aa    MW: 77939.4 Da    PI: 10.2032
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10014485mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.83.8e-111464246
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqk 46
                     + W t E++ll++av+++G+++W++Ia +++        +t+ +c+++++ 
  Ciclev10014485m 14 QQWGTLEELLLACAVNRHGTRSWDSIAMEVQnrssalSSLTPQSCRDKFNE 64
                     67*********************************99999*******9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.62866IPR017877Myb-like domain
SuperFamilySSF466893.5E-61171IPR009057Homeodomain-like
SMARTSM007173.5E-61268IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-61267IPR009057Homeodomain-like
PfamPF002491.1E-101464IPR001005SANT/Myb domain
CDDcd001674.40E-61665No hitNo description
SMARTSM002974.0E-16126413IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.5E-14291416IPR001487Bromodomain
SuperFamilySSF473703.53E-17314417IPR001487Bromodomain
CDDcd043691.26E-15315408No hitNo description
PfamPF004398.4E-11323399IPR001487Bromodomain
PROSITE profilePS5001412.154323394IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MARERHGTTS QQQQQWGTLE ELLLACAVNR HGTRSWDSIA MEVQNRSSAL SSLTPQSCRD  60
KFNEIRRRFT VKNGAESTSL VPLVDQLRQI RVQELRAEVQ RRDVSIVSLE LKVKRLEEER  120
EKSMKPEADL ESDRKAMPEI EAAVDGDGDS NRSFNESNST TQKAETTNKK QNDDAEGEEE  180
KEQKMKPEPD VENDPVQNRT ESGPDREDRD WSSNGKLNEN GNGTGNVKEE TDEDNDKTAS  240
EGKVESVKNK TSAVGGLSES NELWDESKRE GKQSSDVQSS ASLSRNKRRR SGEEPYDEEV  300
SPATKKVLAV KSEPLVRFLG MIRSHRLGSH FERRLRSQES ERYKKLVRQH IDLRTIQSRL  360
DRGLYSNCFQ KFFRDLLLLF NNFVIFFRKS SQEYAAAQEL RTLVIKEMTD MLRKQQPIAV  420
TKPKPKPKPE HHRQQPQPPP ASLSKPNRGS TMVVCGKRSS IKAISKNAYG KKGDRKDREV  480
EEKPKVNEKK VDSSFVGIED KGIKKKRSQE RSVSLRRNSR SSSRSGDVKH QFGGNELSSH  540
DTLEAKTENK KENAVKKKKL GAASFLKRMK QNSPSEVMED DDEEEDENDN DNDDDDSGDD  600
SKDSKVEEEK KRRSVTRRDV NRVTRSSRGR GVREENRRAK RGVGRPPKRS ASGAMSPPEK  660
TSGKRGRDNG ESEVGGGGRS RKRTRR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006445932.10.0glutamic acid-rich protein
TrEMBLV4TZZ90.0V4TZZ9_9ROSI; Uncharacterized protein
STRINGXP_006445932.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1708978
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.13e-39DNA-binding bromodomain-containing protein