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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Ciclev10014811m |
| Common Name | CICLE_v10014811mg |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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| Family |
GRAS |
| Protein Properties |
Length: 548aa MW: 61393.3 Da PI: 5.9014 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Ciclev10014811m | genome | ICGC | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 421.2 | 8.6e-129 | 177 | 547 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94
l+++L+ cA+avs+gd + a l+ l++++s +g+p++Rl ay++e+L+arl s+s++ykal++++ sse +++++++++++P+ kf+
Ciclev10014811m 177 LKQVLIFCAQAVSDGDISTAAGLMRVLEQMVSVSGEPIERLGAYMLEGLRARLEFSGSKIYKALKCEQPV---SSELMSYMSVLFQICPYWKFA 267
5799*****************************************************************8...999999999************ PP
GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
++ aN I eave+e+ +HiiDf+i qG+QW+ Ll+aLa+Rp+g+p +RiTg+++++s+ + l +g+rL++fA++++vpfef+ +a +
Ciclev10014811m 268 YMSANVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSThaRGGGLDIVGKRLSEFAASCNVPFEFHD-TAMTA 360
*******************************************************9988889999***********************.8999* PP
GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
++e ++Lrv+pgEa++Vn+ + lh+++desvs+e++rd++L+lvkslsPkvv++veqe+++n+++F++rfle+l+yy+a+f+s++++ pr+++
Ciclev10014811m 361 CEVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESKTNTSPFFHRFLETLDYYTAMFESIDVTRPRDDK 454
********************************************************************************************** PP
GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
+ri+ E+++++r+ivn++aceg er+erhe l+kWr+r+++aGF+p++ls +++ ++ +l+ ++s+ yrvee++g+l+lgW++r++ + SaW+
Ciclev10014811m 455 QRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDYDSN-YRVEENDGALYLGWRNRAMATSSAWK 547
*****************************************************************77.*************************8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 548 aa
Download sequence Send
to blast |
MQTSQKHQSA ASVQRMYHQP VQGIEPCCLS HVQILDNNIC SDVSSQGTNM SFQTYKEQFY 60
TLDSSTATTG FSHDSPSAVS ISSNRSTFSP QGSQSYQSDP HHSPDNAYGS PMSGSSIVDE 120
SNELRNKLRE LEISLLGPES DIIDSCSCCF KSGTHQDTSA ASWNWDQLME MIPRLDLKQV 180
LIFCAQAVSD GDISTAAGLM RVLEQMVSVS GEPIERLGAY MLEGLRARLE FSGSKIYKAL 240
KCEQPVSSEL MSYMSVLFQI CPYWKFAYMS ANVVIGEAVE NEHIIHIIDF QIAQGTQWMF 300
LLHALAKRPG GSPLVRITGI DDSQSTHARG GGLDIVGKRL SEFAASCNVP FEFHDTAMTA 360
CEVERQHLRV QPGEAVVVNF PFVLHHMPDE SVSTENHRDR LLRLVKSLSP KVVTLVEQES 420
KTNTSPFFHR FLETLDYYTA MFESIDVTRP RDDKQRISAE QHCVARDIVN MIACEGIERV 480
ERHELLGKWR SRFMMAGFTP YRLSPLVTNA VRDVLKDYDS NYRVEENDGA LYLGWRNRAM 540
ATSSAWK*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: During development, higher expression levels are detected in young rosette leaves, senescing leaves and petals and sepals at flower stage 15. {ECO:0000269|PubMed:16680434}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots, hypocotyls, cotyledons, shoot apex, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:16680434, ECO:0000269|PubMed:18500650}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}. |
