PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10014928m

Common Name

CICLE_v10014928mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

HB-other

Protein Properties

Length: 520aa MW: 58664.9 Da PI: 7.1033

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10014928m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.3	1.3e-18	21	75	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ q+ +Le+++++++yp++e++ + A+++gLte+qV+ WF+ rR kek+ Ciclev10014928m 21 KRRYKTPAQVMALEKFYNEHKYPTEEMKSQVAEQIGLTEKQVSGWFCHRRLKEKR 75 78899*************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.4E-21	2	75	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.115	16	76	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.03E-16	17	78	IPR009057	Homeodomain-like
SMART	SM00389	1.6E-17	19	80	IPR001356	Homeobox domain
CDD	cd00086	2.07E-16	21	75	No hit	No description
Pfam	PF00046	4.3E-16	21	75	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 520 aa Download sequence Send to blast
MEDSSEMHSE ENKVSLEKNI KRRYKTPAQV MALEKFYNEH KYPTEEMKSQ VAEQIGLTEK 60 QVSGWFCHRR LKEKRLSVDE AFVGGRQDRS SGVIQDRGSG LRQDSCGSTK QGDYRSIEPR 120 EVQSRMLYCH DFPATDLAYD RNQYAAHASE RDDTSSESSS FLQDRLYSES DKPYANETSR 180 FVRQNGDITP VRCNIGKSKE YKPSGYLKVK GESENAAISA VKRQLGRHYR EDGPPLGVDF 240 DPLPPGAFES PSGDPVNEPF YVGNSRWSNS PDVPEIDKPR ALGTRYEVDS SKMDLQDSYI 300 DENLNSKRSD YAGTKSHNQL KQKSPLLHYS NFSPHQNSSL NAYEDSTPVY DGNHCYSLSS 360 KHDAEWMGLN SVMNHHEPHG GKTNSEEAKP LLNDNHVVSS KMVRNSNYFT RPSNFTLGIS 420 ESLDAKDKGT STKMAKVKKL YKEKKAIKGL RDPVSVKTHL NNEMNVVKRL KGELPQRDYI 480 AKASYAEIPR WTNPIKGSAA EMPSSFSEDE TAETNSSME*

Sequence ? help Back to Top

Protein Sequence Length: 520 aa Download sequence Send to blast

MEDSSEMHSE ENKVSLEKNI KRRYKTPAQV MALEKFYNEH KYPTEEMKSQ VAEQIGLTEK  60
QVSGWFCHRR LKEKRLSVDE AFVGGRQDRS SGVIQDRGSG LRQDSCGSTK QGDYRSIEPR  120
EVQSRMLYCH DFPATDLAYD RNQYAAHASE RDDTSSESSS FLQDRLYSES DKPYANETSR  180
FVRQNGDITP VRCNIGKSKE YKPSGYLKVK GESENAAISA VKRQLGRHYR EDGPPLGVDF  240
DPLPPGAFES PSGDPVNEPF YVGNSRWSNS PDVPEIDKPR ALGTRYEVDS SKMDLQDSYI  300
DENLNSKRSD YAGTKSHNQL KQKSPLLHYS NFSPHQNSSL NAYEDSTPVY DGNHCYSLSS  360
KHDAEWMGLN SVMNHHEPHG GKTNSEEAKP LLNDNHVVSS KMVRNSNYFT RPSNFTLGIS  420
ESLDAKDKGT STKMAKVKKL YKEKKAIKGL RDPVSVKTHL NNEMNVVKRL KGELPQRDYI  480
AKASYAEIPR WTNPIKGSAA EMPSSFSEDE TAETNSSME*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006446272.1	0.0	uncharacterized protein LOC18050776
TrEMBL	V4U0U5	0.0	V4U0U5_9ROSI; Uncharacterized protein
STRING	XP_006446272.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12202	25	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	1e-91	HB-other family protein

Link Out ? help Back to Top
Phytozome	Ciclev10014928m
Entrez Gene	18050776