PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10015039m
Common NameCICLE_v10015039mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 490aa    MW: 53240.8 Da    PI: 6.4321
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10015039mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.12e-053804171254
                      HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      R +++ +++  L++l+ +      +K + a++L +A++YIk L
  Ciclev10015039m 380 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIDYIKFL 417
                      677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.074368417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.45E-6378422No hitNo description
SuperFamilySSF474591.7E-11378434IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-8382424IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MAEEFQTGIC GGAWWINPTR SSSLSPCSAA GIGLSDHMGS FLWPSNDHFH MVDTKTTTLT  60
PAGTATTKFC EESANNNNNN NSVSADTSSM AFTQKHQQTD SDNGGSSSIL MDSTLQMMSL  120
VPSSSSSSTD CFQALLRGNG RAENNYRSMR LEDLNSQIQK EWSPSKSYAS SAGAGDHHQE  180
CFSLDQSHPV IKSATASFPD NCTVSESNCQ GLSPGFPVDS ASYGYTSALL QSYFEPQPQP  240
VQQQSLYSSN NTRSMGNYMS TANYGNNYNE VSPPWPKFAA ASFVKPSLPK QQQQQPSGGL  300
HFSNNTPFWN ATALNDISRP GGLLAAELGE KRTCPTFTAK YNNNEEVRDS GSAAKKGSSE  360
PAFKRPRIET PSPLPTFKVR KEKLGDRITA LQQLVSPFGK TDTASVLHEA IDYIKFLHDQ  420
VSVLTTPYMK QGTQIPQQQS CDHKLKDPEA PKQDLNSRGL CLVPISSTFP VANETTADFW  480
NPTFGGTFR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006449162.10.0transcription factor bHLH112 isoform X1
TrEMBLV4U8V60.0V4U8V6_9ROSI; Uncharacterized protein
STRINGXP_006449162.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80622636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.16e-64bHLH family protein