PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10015261m
Common NameCICLE_v10015261mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family EIL
Protein Properties Length: 443aa    MW: 49780.2 Da    PI: 7.625
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10015261mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3441.38.5e-135373821323
                      XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
             EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraW 94 
                      eel++rmwkd+++lkr+ke++k    +++ a++++k +++++qarrkkmsraQDgiLkYMlk mevc+a+GfvYgiipekgkpv+g+sd++raW
  Ciclev10015261m  37 EELERRMWKDRIKLKRIKEKEKLA--AQQ-AAEKQKPKQTTDQARRKKMSRAQDGILKYMLKLMEVCKARGFVYGIIPEKGKPVSGSSDNIRAW 127
                      8**************999999963..355.599************************************************************* PP

                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT--T CS
             EIN3  95 WkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelglsk 188
                      Wkekv+fd+ngpaai+ky+a++l++s++++++  + ++++ l++lqD+tlgSLLs+lmqhcdppqr++plekgv+pPWWP+G+e+ww++lgl+k
  Ciclev10015261m 128 WKEKVKFDKNGPAAIAKYEAECLAMSEADNNNR-NGNSQSILQDLQDATLGSLLSSLMQHCDPPQRKYPLEKGVPPPWWPSGNEDWWEKLGLPK 220
                      **************************9998865.8889999***************************************************** PP

                      T--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXXX.........XXXXXXXX CS
             EIN3 189 dqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsahss.........slrkqspk 273
                       q  ppykkphdlkk+wkv+vLtavikhmsp+i++ir+++rqsk+lqdkm+akes+++l vl++ee+++++ s+++           ++ ++++
  Ciclev10015261m 221 GQI-PPYKKPHDLKKMWKVGVLTAVIKHMSPDIAKIRRHVRQSKCLQDKMTAKESAIWLGVLSREESLIRQPSSDNGtsgitevpsGVHGNKKQ 313
                      **9.9**********************************************************************4445677777544558889 PP

                      XXXXXXXXXXXXXXXXXX.XXXXXXXXXX....................XXXXXXXXXXXXXXXXXXXXX CS
             EIN3 274 vtlsceqkedvegkkeskikhvqavktta....................gfpvvrkrkkkpsesakvssk 323
                        +s+++++dv+g ++   + ++++++t+                    + +  +kr+ + ++++ +ss+
  Ciclev10015261m 314 PAISSDSDYDVDGIDDVVGSVSSKDNRTNqpvdvepvishhnttihsfqDKERPEKRR-RAKRPRVTSSS 382
                      999*********8888888999999998899999999999988777775323333332.22222222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048732.9E-12737285No hitNo description
Gene3DG3DSA:1.10.3180.103.2E-72159293IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167684.84E-62166289IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042762Biological Processregulation of sulfur metabolic process
GO:0071281Biological Processcellular response to iron ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MGELEEIGAD ICSDIEVDER CGNLVEKDVS DEEIEPEELE RRMWKDRIKL KRIKEKEKLA  60
AQQAAEKQKP KQTTDQARRK KMSRAQDGIL KYMLKLMEVC KARGFVYGII PEKGKPVSGS  120
SDNIRAWWKE KVKFDKNGPA AIAKYEAECL AMSEADNNNR NGNSQSILQD LQDATLGSLL  180
SSLMQHCDPP QRKYPLEKGV PPPWWPSGNE DWWEKLGLPK GQIPPYKKPH DLKKMWKVGV  240
LTAVIKHMSP DIAKIRRHVR QSKCLQDKMT AKESAIWLGV LSREESLIRQ PSSDNGTSGI  300
TEVPSGVHGN KKQPAISSDS DYDVDGIDDV VGSVSSKDNR TNQPVDVEPV ISHHNTTIHS  360
FQDKERPEKR RRAKRPRVTS SSADQQPGES VNEHPHDEPR KTLPDINHSD VLLIDYTMQG  420
NQEQNNAVTA LRPVEGGFVG HS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wij_A4e-771652969140ETHYLENE-INSENSITIVE3-like 3 protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1367375EKRRRAKRP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the ethylene response pathway. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00233DAPTransfer from AT1G73730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006445977.10.0ETHYLENE INSENSITIVE 3-like 3 protein
SwissprotO231160.0EIL3_ARATH; ETHYLENE INSENSITIVE 3-like 3 protein
TrEMBLV4U0370.0V4U037_9ROSI; Uncharacterized protein
STRINGXP_006445977.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46582548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73730.11e-157ETHYLENE-INSENSITIVE3-like 3
Publications ? help Back to Top
  1. Frerigmann H,Gigolashvili T
    Update on the role of R2R3-MYBs in the regulation of glucosinolates upon sulfur deficiency.
    Front Plant Sci, 2014. 5: p. 626
    [PMID:25426131]
  2. Zheng ZL,Zhang B,Leustek T
    Transceptors at the boundary of nutrient transporters and receptors: a new role for Arabidopsis SULTR1;2 in sulfur sensing.
    Front Plant Sci, 2014. 5: p. 710
    [PMID:25566284]
  3. Panda SK,Sunkar R
    Nutrient- and other stress-responsive microRNAs in plants: Role for thiol-based redox signaling.
    Plant Signal Behav, 2015. 10(4): p. e1010916
    [PMID:25912823]
  4. Wawrzyńska A,Sirko A
    EIN3 interferes with the sulfur deficiency signaling in Arabidopsis thaliana through direct interaction with the SLIM1 transcription factor.
    Plant Sci., 2016. 253: p. 50-57
    [PMID:27968996]