PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10015413m
Common NameCICLE_v10015413mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HSF
Protein Properties Length: 413aa    MW: 46685.3 Da    PI: 4.9739
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10015413mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.91e-35161072102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl k+ye+++d+ +++l+sws++g sf+v+++ +fak++Lp+yFkh+nf+SFvRQLn+YgF+k++ ++         weF++++F +g+++ll+
  Ciclev10015413m  16 FLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPQYFKHNNFSSFVRQLNTYGFRKIDPDQ---------WEFANEEFIRGQRHLLK 100
                      9****************************************************************999.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +i+r+k 
  Ciclev10015413m 101 NIHRRKP 107
                      ****985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.4E-387100IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.76E-3511105IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-6212105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.4E-201639IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.1E-3116105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.4E-205466IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405579IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.4E-206779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MDESQGQGSS NSPAPFLIKT YEMVDDPLTN SLVSWSQSGG SFIVWNPPDF AKDLLPQYFK  60
HNNFSSFVRQ LNTYGFRKID PDQWEFANEE FIRGQRHLLK NIHRRKPVHS HSTQSPTPLT  120
ETERNEFEAK IERLKKENSL LQLELRRREG GNHEFEYHVQ SVRERLRYLE NRQTQMIACL  180
ANLLKKPGFS SALNQQAEVH SKKRRLLRPT TIEYFDDVKS ASLSVNEQKE NPDATSDPSP  240
ALNLEQIDRL ESSVDFWTFF LYGLGEAFNQ DVYDFGVLRP VSAVTDDEIE EGVSSEEHDV  300
LSNVSSPKSM DVHSSPKQVA SSENPVDGAS ATEDETANSS VKNRANDQFW EQFLTETPAA  360
TASSSARPES TDPESGSAYV NKPAEADSKK FWWHSNNLDT LTRHFGNLTS AG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-27810522129Heat shock factor protein 1
5d5v_B5e-27810522129Heat shock factor protein 1
5d5v_D5e-27810522129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.200730.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR4920891e-102KR492089.1 UNVERIFIED: Citrus sinensis clone 156-1c mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006448027.10.0heat stress transcription factor A-4b
RefseqXP_006492257.10.0heat stress transcription factor A-4b-like
TrEMBLA0A2H5PHE60.0A0A2H5PHE6_CITUN; Uncharacterized protein
TrEMBLV4U5S90.0V4U5S9_9ROSI; Uncharacterized protein
STRINGXP_006492257.10.0(Citrus sinensis)
STRINGXP_006448027.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM167341012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-75heat shock transcription factor A4A