PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10015581m
Common NameCICLE_v10015581mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family TALE
Protein Properties Length: 385aa    MW: 42988.3 Da    PI: 6.4023
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10015581mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.42.1e-073093442155
                      HSSS--HH.HHHHHHHHCTS-HHHHHHHHHHHHHHH CS
         Homeobox  21 knrypsae.ereeLAkklgLterqVkvWFqNrRake 55 
                      k +yps+e ++  LA+++gL+ +q+ +WF N+R ++
  Ciclev10015581m 309 KWPYPSQEsQKLALAESTGLDSKQINNWFINQRKRH 344
                      5689987626779********************885 PP
2ELK37.45.5e-13263284122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELK qLlr Ysg+L+sLkqEF+
  Ciclev10015581m 263 ELKGQLLRRYSGCLSSLKQEFM 284
                      9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.8E-19127171IPR005540KNOX1
PfamPF037904.3E-21129167IPR005540KNOX1
SMARTSM012568.5E-27176227IPR005541KNOX2
PfamPF037911.3E-22179225IPR005541KNOX2
PfamPF037892.1E-10263284IPR005539ELK domain
PROSITE profilePS5121310.423263283IPR005539ELK domain
SMARTSM011888.6E-8263284IPR005539ELK domain
PROSITE profilePS5007110.349283347IPR001356Homeobox domain
SMARTSM003892.8E-8285351IPR001356Homeobox domain
SuperFamilySSF466891.8E-16285358IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.5E-26288350IPR009057Homeodomain-like
CDDcd000861.56E-10295348No hitNo description
PfamPF059208.9E-15303343IPR008422Homeobox KN domain
PROSITE patternPS000270322345IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009934Biological Processregulation of meristem structural organization
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MDGGSNSTSC MNMMAFGDNS NGLYCPMMMM PLMSSFTHQH HRHDHHHDEH HQHHLDADSN  60
TLFLPLAAAA TTTINNIVPN QNRNSSSGSS LILEDNTTAT ATAINTINNS SARCYFMETN  120
YGSGASSSVK AKIMAHPHYH RLLAAYANCQ KVGAPPEVVA RLEEVCASAA SMGSGGSSCI  180
GQDPALDQFM EAYCEMLTKY EQELSKPFKE AMSFLQKIES QFKSLSISSP NSASSEAIDR  240
NGSSEEDFDV NIDFIDPQAE DQELKGQLLR RYSGCLSSLK QEFMKKRKKG KLPKEARQQL  300
LDWWSKHYKW PYPSQESQKL ALAESTGLDS KQINNWFINQ RKRHWKPSED MQFMVMDATQ  360
PQYYIDSTVM GNPFPMDLSP APLL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1278287LKQEFMKKRK
2284288KKRKK
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First expressed in the embryo proliferation stage, increases during early somatic embryo development and decreases thereafter.
UniprotTISSUE SPECIFICITY: Expressed mainly in embryonic tissues. Weakly detected in stems and hypocotyl.
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006449809.10.0homeobox protein SHOOT MERISTEMLESS isoform X1
SwissprotP466081e-147HSBH1_SOYBN; Homeobox protein SBH1
TrEMBLV4W9S00.0V4W9S0_9ROSI; Uncharacterized protein
STRINGXP_006449809.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64732644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.11e-124KNOX/ELK homeobox transcription factor
Publications ? help Back to Top
  1. Shu Y, et al.
    GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean.
    Plant Cell Rep., 2015. 34(11): p. 1927-37
    [PMID:26205508]