PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10015818m
Common NameCICLE_v10015818mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family TALE
Protein Properties Length: 346aa    MW: 38413.2 Da    PI: 5.9251
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10015818mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.11.7e-092733062255
                      SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
         Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                       +yps+ ++  LA+++gL+++q+ +WF N+R ++
  Ciclev10015818m 273 WPYPSEPQKLALAESTGLDQKQINNWFINQRKRH 306
                      58*****************************885 PP
2ELK35.42.4e-12226247122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      +LK+qLlr Ysg+LgsLkqEF+
  Ciclev10015818m 226 DLKDQLLRRYSGSLGSLKQEFL 247
                      6********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012555.4E-1583127IPR005540KNOX1
PfamPF037903.2E-1985123IPR005540KNOX1
SMARTSM012561.5E-21137188IPR005541KNOX2
PfamPF037917.5E-20141186IPR005541KNOX2
PROSITE profilePS5121310.58226246IPR005539ELK domain
SMARTSM011882.5E-6226247IPR005539ELK domain
PfamPF037897.9E-10226247IPR005539ELK domain
PROSITE profilePS5007112.552246309IPR001356Homeobox domain
SMARTSM003897.5E-14248313IPR001356Homeobox domain
SuperFamilySSF466892.99E-19248322IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-27251311IPR009057Homeodomain-like
CDDcd000862.82E-12258310No hitNo description
PfamPF059202.3E-15266305IPR008422Homeobox KN domain
PROSITE patternPS000270284307IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MESGGTSSTR NPNCWMVLGE SSSNNNGNVN NNMNGSLCSI MMMNSSAGTT SDHNNKAFLP  60
PNLMMPPPQQ QEVQYDCTDN SSNSIKAGIF AHPHFPRLLA SYVNCQKVGA PAQVVARLDE  120
ACASGEAIMS RSSAGTAASR VGDDPALDQF MEAYCEMLTK YEQELTKPFK DASLFLSEID  180
AQLKTLAVSS NISVVAFGDS AGQSGSSEEE IDVKDHCIDP LAEDRDLKDQ LLRRYSGSLG  240
SLKQEFLKKK KKGKLPKEAR QLLLDWWSRH HRWPYPSEPQ KLALAESTGL DQKQINNWFI  300
NQRKRHWKPS EDMQFVMMDA AYPQYYMENG VGNPFPMDCT TLARF*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First expressed in the embryo proliferation stage, increases during early somatic embryo development and decreases thereafter.
UniprotTISSUE SPECIFICITY: Expressed mainly in embryonic tissues. Weakly detected in stems and hypocotyl.
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF5337021e-36EF533702.1 Glycine max clone BAC GM_WBb098N11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024046106.10.0homeobox protein knotted-1-like LET6
RefseqXP_024950608.10.0homeobox protein knotted-1-like LET6
SwissprotP466081e-120HSBH1_SOYBN; Homeobox protein SBH1
TrEMBLV4U4K90.0V4U4K9_9ROSI; Uncharacterized protein
STRINGXP_006469758.10.0(Citrus sinensis)
STRINGXP_006447622.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64732644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.17e-99KNOX/ELK homeobox transcription factor
Publications ? help Back to Top
  1. Shu Y, et al.
    GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean.
    Plant Cell Rep., 2015. 34(11): p. 1927-37
    [PMID:26205508]