PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10015879m

Common Name

CICLE_v10015879mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Dof

Protein Properties

Length: 334aa MW: 36756.3 Da PI: 9.6666

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10015879m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.1	4e-38	35	95	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 + + +kcprC+s ntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rk k+++ Ciclev10015879m 35 QPQPQKCPRCESLNTKFCYYNNYSLSQPRYFCKTCRRYWTQGGTLRNVPVGGGCRKGKRTK 95 56889***************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.2E-32	38	93	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.705	39	93	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-19	40	84	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	41	77	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MQQQERGGSS EERKQQDRRL KTMQGGTENQ QQQEQPQPQK CPRCESLNTK FCYYNNYSLS 60 QPRYFCKTCR RYWTQGGTLR NVPVGGGCRK GKRTKTSSVS GEASRASQPP QPPSPPHPNF 120 TTTQQNILSS SNPVITTGPP VLRTKLEPAA APPSMGSYYP SGGFLSSLAA IQSQSFNPQP 180 LHQAFNVGGA DHHHNIGGSS NLDLLQGFST VPSFGSSHTQ HQQIQRSKFY HHQMGNRDKS 240 ANPMHMMYHT IPSDQENLTI QSRRPGSSSS HHQQHDWHQQ GSFINNGNNP NVPDHDTSLW 300 SVSTASANSN NTSVSGSLNP NQWPDLPGYG PPP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006449370.2	0.0	dof zinc finger protein DOF2.1
Refseq	XP_024047725.1	0.0	dof zinc finger protein DOF2.1
Refseq	XP_024047726.1	0.0	dof zinc finger protein DOF2.1
Refseq	XP_024047727.1	0.0	dof zinc finger protein DOF2.1
TrEMBL	V4UEJ3	0.0	V4UEJ3_9ROSI; Uncharacterized protein
STRING	XP_006449370.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15986	9	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	3e-25	TARGET OF MONOPTEROS 6

Link Out ? help Back to Top
Phytozome	Ciclev10015879m
Entrez Gene	18053439