PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10015966m
Common NameCICLE_v10015966mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bZIP
Protein Properties Length: 319aa    MW: 35330.2 Da    PI: 7.4438
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10015966mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.49.6e-11191234548
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 
                      kr +r   NR +A+rsR RK+++i eLe+ v +L+ae + L  +
  Ciclev10015966m 191 KRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPR 234
                      8999********************************98877655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003388.8E-14187251IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.622189241IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.1E-11191245No hitNo description
PfamPF001703.2E-9191234IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.2E-11191242No hitNo description
CDDcd147031.66E-23192242No hitNo description
PROSITE patternPS000360194209IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MAQLPPKIPN MGPAWPDFFH HKVPSSMANN NINNSSNVHN PSWVDEFLDF SSARRGTHRR  60
SVSDSITYLE APMLDECRGA GAAPGSGSGS GNITNSNHHE FDKFDDEQFM SMFTDDLPNA  120
TVPPTLSSSN PSTPSDHNSI NDEKDAPSDQ KQQTVRNESD EVQSRCKTEA QGPPHGAAAA  180
SNSSDRIVDP KRVKRILANR QSAQRSRVRK LQYISELERS VTSLQAEVSV LSPRVAFLDH  240
QRLLLNVDNS ALKQRIAALA QDKIFKDAHQ EALKREIQRL RQVYHQQNLK KMENGASPAP  300
TQAAEVRVSV EKEQLLHV*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator. {ECO:0000269|PubMed:17719007}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006446743.10.0basic leucine zipper 61
SwissprotQ9M2K41e-127BZP61_ARATH; Basic leucine zipper 61
TrEMBLV4THT80.0V4THT8_9ROSI; Uncharacterized protein
STRINGXP_006446743.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17532777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58120.11e-115bZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]