PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10016016m

Common Name

CICLE_v10016016mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Trihelix

Protein Properties

Length: 312aa MW: 35094.9 Da PI: 6.3301

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10016016m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	50.6	5.2e-16	33	123	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++ + +L++a ++ +l+rg+l++++W++v++++ ++++ +r+ +qCk++++ ++k+yk +k++ + + + +s++p+f++++ Ciclev10016016m 33 CWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVnalhaHSKKTHRTDVQCKNRIDTIKKKYKIEKARVVSSNGTLTSSWPFFERMD 123 7***************************************999***********************99998888999*****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.8E-26	31	125	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MGDLTESLTP STTTTTPTST TPYSRPLPVR EDCWSEEATS TLVDAWGRRY LELNRGNLRQ 60 KDWQDVADAV NALHAHSKKT HRTDVQCKNR IDTIKKKYKI EKARVVSSNG TLTSSWPFFE 120 RMDTLIGNNV KPSSNFSPKL SQSQSPPVAV PLAYRKSVSV NNSNINNINN NNNSNSLALA 180 PIPTATAVAL PQKRGYNSEG FYRNYSAVAA AAAAAESEDE EAEEEAEEEE NDNVNEENSG 240 VKRLAKAIER FGEVYERVEA EKLRQMVELE KQRMQFASDL EMQRLRMFTE MQVQLERNKR 300 TKRSGSNDMY S*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006449505.1	0.0	trihelix transcription factor ASIL2
Refseq	XP_006467646.1	0.0	trihelix transcription factor ASIL2 isoform X2
TrEMBL	A0A067GR02	0.0	A0A067GR02_CITSI; Uncharacterized protein
TrEMBL	V4UF05	0.0	V4UF05_9ROSI; Uncharacterized protein
STRING	XP_006467646.1	0.0	(Citrus sinensis)
STRING	XP_006449505.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9635	23	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	1e-40	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Ciclev10016016m
Entrez Gene	18052824