PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10016071m
Common NameCICLE_v10016071mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 304aa    MW: 34840 Da    PI: 9.958
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10016071mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.51.5e-0891133444
                      S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 
                      W   Ed+l+ +a  +++ +   +W +Ia+ ++ g+++ ++++++
  Ciclev10016071m  91 WNRSEDKLFEHALVMFPEEspdRWQKIASQLP-GKSAVEVREHY 133
                      999**************99*************.**********9 PP
2Myb_DNA-binding46.49.3e-15184228347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G+g+W++I+r +  +Rt+ q+ s+ qky
  Ciclev10016071m 184 PWTEEEHKLFLIGLKKFGKGDWRSISRNVVVTRTPTQVASHAQKY 228
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.4E-1087139IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-689137IPR009057Homeodomain-like
SuperFamilySSF466891.09E-1189145IPR009057Homeodomain-like
PfamPF002491.8E-790134IPR001005SANT/Myb domain
PROSITE profilePS500906.95791137IPR017877Myb-like domain
CDDcd001677.21E-891137No hitNo description
PROSITE profilePS5129420.446176233IPR017930Myb domain
SuperFamilySSF466891.0E-16179234IPR009057Homeodomain-like
TIGRFAMsTIGR015575.4E-17180232IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.603.4E-11181227IPR009057Homeodomain-like
SMARTSM007172.5E-11181231IPR001005SANT/Myb domain
PfamPF002491.6E-12184228IPR001005SANT/Myb domain
CDDcd001671.07E-9184229No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MTKQNSKNSK SQIFFTLSYK YPKQKALTLK IKISHQTKLF SYVRNLQEST KSFLIESFKQ  60
TPYRRLSMYQ QDIKNDDSNN NSFAMTHSTH WNRSEDKLFE HALVMFPEES PDRWQKIASQ  120
LPGKSAVEVR EHYEALVHDV YEIDSGRVEL PSYADDSDWD SPSQISFAPK STKHGDPERK  180
KGTPWTEEEH KLFLIGLKKF GKGDWRSISR NVVVTRTPTQ VASHAQKYFL RQTSVKKERK  240
RSSIHDITTV DNPSVGLPVD QNWISSPGGT GPQQPPVLQQ FHPPNQFSGQ GGSLGYQNYG  300
FHM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-12911531173RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00055PBMTransfer from AT5G04760Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006445756.21e-178transcription factor SRM1
RefseqXP_006485458.11e-178transcription factor SRM1
SwissprotQ9FNN64e-58SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A2H5PNP10.0A0A2H5PNP1_CITUN; Uncharacterized protein
TrEMBLV4U9T90.0V4U9T9_9ROSI; Uncharacterized protein
STRINGXP_006445756.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51272750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.11e-70MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]