PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10016073m

Common Name

CICLE_v10016073mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

G2-like

Protein Properties

Length: 304aa MW: 33374.8 Da PI: 6.6722

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10016073m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.1	4.1e-33	34	88	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av+qLGG+ kAtPk+i+++m+vkgLtl h+kSHLQkYRl Ciclev10016073m 34 KPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRL 88 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.6E-31	31	89	IPR009057	Homeodomain-like
PROSITE profile	PS51294	9.769	31	91	IPR017930	Myb domain
SuperFamily	SSF46689	2.15E-16	34	90	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.8E-24	34	89	IPR006447	Myb domain, plants
Pfam	PF00249	3.1E-7	36	87	IPR001005	SANT/Myb domain
Pfam	PF14379	3.7E-16	129	173	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MIQREEIINR TSYHYHQNHG GGIEPCVVMT SDPKPRLRWT ADLHDRFVDA VTQLGGPSKA 60 TPKAIMRTMN VKGLTLFHLK SHLQKYRLGK QSGREMGDSP KDASYLIESS ANDNSPPNFP 120 ASDMNESYEV KEALRVQMEV QSKLHLQVEA EKHLQIRQNA QQRYLAMLER ACKILTDQIL 180 GGAVVDADSE KCKGLGTKMP RSYILDSLGF YTSQSVEVAE VQCPEELLPN LHPQRADCST 240 ESCLTSHESS GGLTMEGSPV GGKNSILSLD TTTGSLIWGE VKMGAQEISL ARVNPSGISS 300 YGI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-18	34	90	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-18	34	90	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	5e-18	34	90	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-18	34	90	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-18	34	90	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-18	34	90	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-18	34	90	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-18	34	90	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-18	34	90	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-18	34	90	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-18	34	90	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-18	34	90	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ccl.6547	0.0	fruit

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269\|PubMed:15634699, ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006449968.1	0.0	protein PHR1-LIKE 3 isoform X1
Swissprot	Q8LAJ7	3e-64	PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBL	A0A2H5N666	0.0	A0A2H5N666_CITUN; Uncharacterized protein
TrEMBL	V4TRR7	0.0	V4TRR7_9ROSI; Uncharacterized protein
STRING	XP_006449968.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17085	9	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.1	1e-66	G2-like family protein

Link Out ? help Back to Top
Phytozome	Ciclev10016073m
Entrez Gene	18050588

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590]