PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10016081m

Common Name

CICLE_v10015595mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

DBB

Protein Properties

Length: 303aa MW: 33778.2 Da PI: 4.5097

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10016081m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	26	1.9e-08	15	54	4	37
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 C+ +++k + l+C+ ++ lC C +++H+ H Ciclev10016081m 15 ALCDFCNSKLAVLYCTADSAKLCLFCDQQIHSAnalslrH 54 57*****************************645555555 PP
2	zf-B_box	18.9	3.1e-06	57	100	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 ++C+++ ++++ C + + +lC+dC +H + H+++ Ciclev10016081m 57 SQICDNCRAEPVSVRCCTENLMLCQDCDWDSHYNssvssvHERS 100 589*************************9999556788888766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	1.2E-9	12	59	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.471	12	59	IPR000315	B-box-type zinc finger
Pfam	PF00643	3.1E-6	16	54	IPR000315	B-box-type zinc finger
CDD	cd00021	8.55E-7	16	47	No hit	No description
PROSITE profile	PS50119	9.072	55	102	IPR000315	B-box-type zinc finger
CDD	cd00021	2.39E-5	59	88	No hit	No description
SMART	SM00336	0.97	60	102	IPR000315	B-box-type zinc finger

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MEDSFKLSPG SSMLALCDFC NSKLAVLYCT ADSAKLCLFC DQQIHSANAL SLRHLRSQIC 60 DNCRAEPVSV RCCTENLMLC QDCDWDSHYN SSVSSVHERS SVEGFSGCPS VTELASFFDL 120 MGDDLLNLGS GFGVYEPKML NFEELAVPTQ NCSVFMSGNK YKKEVYEQLV EIGKRDLVRF 180 NGNGAELGPG TTTSICDQYG YTQSLEVENI DEEKLLNPKT AFTSLLAFPN NTDLREHDRC 240 VADGKLMWDW DPSYPAAQNM VILAKIFMPF PTKLCCRLTS DDKGRRAYFL DTQLSEKFSE 300 SL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006446976.1	0.0	zinc finger protein CONSTANS-LIKE 14 isoform X2
Refseq	XP_006468864.1	0.0	zinc finger protein CONSTANS-LIKE 14-like isoform X1
Swissprot	O22800	2e-47	COL14_ARATH; Zinc finger protein CONSTANS-LIKE 14
TrEMBL	V4U7Z3	0.0	V4U7Z3_9ROSI; Uncharacterized protein
STRING	XP_006468864.1	0.0	(Citrus sinensis)
STRING	XP_006446976.1	0.0	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33500.2	6e-43	B-box type zinc finger protein with CCT domain

Link Out ? help Back to Top
Phytozome	Ciclev10016081m
Entrez Gene	18052757

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]