PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10016333m
Common NameCICLE_v10015595mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family DBB
Protein Properties Length: 259aa    MW: 28681.2 Da    PI: 4.3268
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10016333mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box26.31.6e-081554437
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                       C+ +++k + l+C+ ++  lC  C +++H+       H
  Ciclev10016333m 15 ALCDFCNSKLAVLYCTADSAKLCLFCDQQIHSAnalslrH 54
                     57*****************************655555555 PP
2zf-B_box19.32.4e-0657100340
         zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 
                       ++C+++  ++++  C + + +lC+dC   +H +      H+++
  Ciclev10016333m  57 SQICDNCRAEPVSVRCCTENLMLCQDCDWDSHYNssvssvHERS 100
                      589**************************99*556788888766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.2E-91259IPR000315B-box-type zinc finger
PROSITE profilePS501199.4711259IPR000315B-box-type zinc finger
PfamPF006432.5E-61654IPR000315B-box-type zinc finger
CDDcd000217.28E-71647No hitNo description
PROSITE profilePS501199.07255102IPR000315B-box-type zinc finger
CDDcd000212.21E-55988No hitNo description
SMARTSM003360.9760102IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MEDSFKLSPG SSMLALCDFC NSKLAVLYCT ADSAKLCLFC DQQIHSANAL SLRHLRSQIC  60
DNCRAEPVSV RCCTENLMLC QDCDWDSHYN SSVSSVHERS SVEGFSGCPS VTELASFFDL  120
MGDDLLNLGS GFGVYEPKML NFEELAVPTQ NCSVFMSGNK YKKEVYEQLV EIGKRDLVRF  180
NGNGAELGPG TTTSICDQYG YTQSLEVENI DEEKLLNPKT AFTSLLAFPN NTDLREHDRC  240
VADGKLMWDW DPSYPAAQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006446976.10.0zinc finger protein CONSTANS-LIKE 14 isoform X2
RefseqXP_006468864.10.0zinc finger protein CONSTANS-LIKE 14-like isoform X1
RefseqXP_024046248.10.0zinc finger protein CONSTANS-LIKE 14 isoform X1
RefseqXP_024046249.10.0zinc finger protein CONSTANS-LIKE 14 isoform X3
RefseqXP_024951441.10.0zinc finger protein CONSTANS-LIKE 14-like isoform X2
SwissprotO228005e-48COL14_ARATH; Zinc finger protein CONSTANS-LIKE 14
TrEMBLA0A067E6A70.0A0A067E6A7_CITSI; Uncharacterized protein
TrEMBLV4UD920.0V4UD92_9ROSI; Uncharacterized protein
STRINGXP_006468864.10.0(Citrus sinensis)
STRINGXP_006446976.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.23e-43B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]