PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10016335m

Common Name

CICLE_v10016736mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

FAR1

Protein Properties

Length: 259aa MW: 30318.9 Da PI: 5.1894

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10016335m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84.6	1.6e-26	78	168	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +Y++++GF+vr++++++s+ n+ ++ ++fvCskeg+re++ ++++ + + tr gC a+l++ +++ +kw+vtk+ +eHnHel+ Ciclev10016335m 78 EFYVAYGRRTGFTVRIHHNRRSRINNVVIGQDFVCSKEGFREKKYMYRKDR-VlpPPPITREGCPAMLRLALRDGDKWVVTKFIKEHNHELM 168 6****************************************99983333.244899******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.5E-24	78	168	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MESTSNQVID SDESERYLQV AGYDENDLAD DDLSKNIELY TGEVDKILEQ SFESLPSVGD 60 AEEPYIGLEF KSRDDAREFY VAYGRRTGFT VRIHHNRRSR INNVVIGQDF VCSKEGFREK 120 KYMYRKDRVL PPPPITREGC PAMLRLALRD GDKWVVTKFI KEHNHELMSP SKVPWRGSTK 180 NFISEDEKDR RIRELTIELN NERQRFKRRC AAYQEQLNMV FKFVEEHTDH LSGRVKDIVD 240 NIRELEDEQP ENSDCKCV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006447973.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X1
Refseq	XP_006492213.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBL	A0A2H5PH10	0.0	A0A2H5PH10_CITUN; Uncharacterized protein
TrEMBL	V4UAQ9	0.0	V4UAQ9_9ROSI; Uncharacterized protein
STRING	XP_006492213.1	0.0	(Citrus sinensis)
STRING	XP_006447973.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16529	7	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	4e-37	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Ciclev10016335m
Entrez Gene	18051660