PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10016394m
Common NameCICLE_v10016394mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MIKC_MADS
Protein Properties Length: 249aa    MW: 28666.6 Da    PI: 7.1171
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10016394mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.65.8e-271059251
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     rie+ +nrqvtfskRr g+lKKA ELSvLCdae+ +iifs tgkl e++s
  Ciclev10016394m 10 RIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCS 59
                     9***********************************************96 PP
2K-box61.82.6e-2183169994
            K-box   9 leeakaeslqqelakLkkeienLqreqRhllGe.dLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                      ++++++e  ++el +++ke++nL+ ++R++ G+ dL+s +l+eL qLe+qLe s+kk+R +K+e+l++q+++l +kek+l+een+++
  Ciclev10016394m  83 VNNHDSEAIYNELGRMRKETHNLELSLRRYTGDiDLNSVKLEELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQI 169
                      66778899************************989*************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.3E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.978161IPR002100Transcription factor, MADS-box
CDDcd002651.50E-40278No hitNo description
SuperFamilySSF554557.85E-31280IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.9E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-273859IPR002100Transcription factor, MADS-box
PfamPF014868.9E-2185169IPR002487Transcription factor, K-box
PROSITE profilePS5129714.39388179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0019252Biological Processstarch biosynthetic process
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0048316Biological Processseed development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MGRGKIEIAR IESRTNRQVT FSKRRGGLLK KARELSVLCD AEIGLIIFSC TGKLTEFCSE  60
STSIEEIIRR YQAAKGVRIP AGVNNHDSEA IYNELGRMRK ETHNLELSLR RYTGDIDLNS  120
VKLEELTQLE HQLECSVKKV RVRKMEILRQ QTDNLLRKEK MLEEENEQIF SLFKDNNNQM  180
AWEQQQQQQA AMVSKFEEHG QVLDQFPFSG EAQPSSVLEL AIPHYQPFRL QPTQPNLQDF  240
GLHFPTFG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-19171169MEF2C
5f28_B5e-19171169MEF2C
5f28_C5e-19171169MEF2C
5f28_D5e-19171169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6343930.0HQ634393.1 Citrus clementina cultivar Clemenules hypothetical protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006448672.10.0MADS-box protein defh21 isoform X2
SwissprotQ9ATE56e-68FBP24_PETHY; MADS-box protein FBP24
TrEMBLA0A2H5P9Q30.0A0A2H5P9Q3_CITUN; Uncharacterized protein
TrEMBLV4U7I00.0V4U7I0_9ROSI; Uncharacterized protein
STRINGXP_006448672.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3301022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.24e-56MIKC_MADS family protein
Publications ? help Back to Top
  1. Tonaco IA,Borst JW,de Vries SC,Angenent GC,Immink RG
    In vivo imaging of MADS-box transcription factor interactions.
    J. Exp. Bot., 2006. 57(1): p. 33-42
    [PMID:16291798]