PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10016422m
Common NameCICLE_v10016422mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family LBD
Protein Properties Length: 247aa    MW: 26903.4 Da    PI: 8.8108
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10016422mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.32.7e-294107199
           DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                      +C++C++lr++C++dC++ p++      ++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ dP++G+vg++++++++ +q
  Ciclev10016422m   4 SCNGCRILRKGCSDDCIIKPCLdwiksSDAQANATLFLAKFYGRAGLINLIEAGPQHLRPAIFKSLLYEACGRIVDPISGSVGLLWSGKWEQCQ 97 
                      6*********************9998667889************************************************************** PP

           DUF260  90 lkaelallke 99 
                      ++++++l ++
  Ciclev10016422m  98 AAVDAVLKGK 107
                      **99988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.873109IPR004883Lateral organ boundaries, LOB
PfamPF031955.9E-244102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MRMSCNGCRI LRKGCSDDCI IKPCLDWIKS SDAQANATLF LAKFYGRAGL INLIEAGPQH  60
LRPAIFKSLL YEACGRIVDP ISGSVGLLWS GKWEQCQAAV DAVLKGKTIT QNPSSSSSSS  120
SSNNNAPAAA PWTLNVQSPP PKIYDIRHVS KDPSAANCSD KTKARAKRSW NRRPKAPVVG  180
RESIQDQSSW LQSQVISRSE DDYESIFSVE TVEGSLDVNR NKQRWVQNGS GDVGLELTLC  240
LPPTNH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006448476.10.0LOB domain-containing protein 42
SwissprotQ9CA302e-73LBD42_ARATH; LOB domain-containing protein 42
TrEMBLA0A2H5P5710.0A0A2H5P571_CITUN; Uncharacterized protein
TrEMBLV4UHF90.0V4UHF9_9ROSI; Uncharacterized protein
STRINGXP_006448476.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84632639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.18e-73LOB domain-containing protein 41