PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10016427m
Common NameCICLE_v10016427mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MIKC_MADS
Protein Properties Length: 246aa    MW: 28189 Da    PI: 10.0579
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10016427mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.72.4e-312878151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     krien++nrqvtf+kRrng+lKKA+ELSvLCdae+a+i+fss+g+lyeys+
  Ciclev10016427m 28 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEIALIVFSSRGRLYEYSN 78
                     79***********************************************95 PP
2K-box1126.1e-37961924100
            K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                      s++ s +ea+a+ +qqe+akL+ +i+n+q+++R++lGe+L+ L++keL+++e++Lek++++iRskKnell+++ie++qk+e +l++ n+ Lr+k
  Ciclev10016427m  96 SNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAK 189
                      4444599*************************************************************************************** PP

            K-box  98 lee 100
                      ++e
  Ciclev10016427m 190 IAE 192
                      986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-422079IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.9782080IPR002100Transcription factor, MADS-box
CDDcd002656.65E-452194No hitNo description
SuperFamilySSF554553.92E-332192IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-332242IPR002100Transcription factor, MADS-box
PROSITE patternPS0035002276IPR002100Transcription factor, MADS-box
PfamPF003192.2E-262976IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-334257IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-335778IPR002100Transcription factor, MADS-box
PfamPF014861.2E-26105190IPR002487Transcription factor, K-box
PROSITE profilePS5129715.081106196IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MAFPNELAAG REELSPKRKM GRGKIEIKRI ENTTNRQVTF CKRRNGLLKK AYELSVLCDA  60
EIALIVFSSR GRLYEYSNNS VKSTIDRYKK ATADTSNTGS ICEANAQFYQ QEAAKLRIQI  120
SNMQNSNRNM LGESLSGLNF KELKNMETRL EKGISRIRSK KNELLFAEIE YMQKREVDLH  180
NSNQLLRAKI AENERGQQNM NLMQGGSSYE IIQSQPFDSR SYFQVNALQP TNHYPRQDQM  240
ALQLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P9e-212088169Myocyte-specific enhancer factor 2B
1tqe_Q9e-212088169Myocyte-specific enhancer factor 2B
1tqe_R9e-212088169Myocyte-specific enhancer factor 2B
1tqe_S9e-212088169Myocyte-specific enhancer factor 2B
6c9l_A9e-212088169Myocyte-specific enhancer factor 2B
6c9l_B9e-212088169Myocyte-specific enhancer factor 2B
6c9l_C9e-212088169Myocyte-specific enhancer factor 2B
6c9l_D9e-212088169Myocyte-specific enhancer factor 2B
6c9l_E9e-212088169Myocyte-specific enhancer factor 2B
6c9l_F9e-212088169Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.30150.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed exclusively in stamens and carpels.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2186100.0AB218610.1 Citrus unshiu CitMADS1 mRNA for MADS-box protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006449577.10.0floral homeotic protein AGAMOUS
SwissprotQ408851e-132AG_PETHY; Floral homeotic protein AGAMOUS
TrEMBLQ05KK31e-180Q05KK3_CITUN; MADS-box protein
TrEMBLV4TQL41e-180V4TQL4_9ROSI; Uncharacterized protein
STRINGXP_006449577.11e-180(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61812237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-128MIKC_MADS family protein
Publications ? help Back to Top
  1. Immink RG, et al.
    Analysis of the petunia MADS-box transcription factor family.
    Mol. Genet. Genomics, 2003. 268(5): p. 598-606
    [PMID:12589434]