PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10016461m
Common NameCICLE_v10016461mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 243aa    MW: 26942.3 Da    PI: 6.8749
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10016461mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.42.5e-08135182455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR+riN+++  L++l+P +     k +  a +L   ++Y++sLq
  Ciclev10016461m 135 SHSLAERVRRERINERLRCLQDLVPGC----YKTMGMAVMLDVIINYVRSLQ 182
                      8*************************8....355888888999999988887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.56E-11129186No hitNo description
SuperFamilySSF474591.13E-16129200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-15131193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.358131181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-5135182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-8137187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:2000488Biological Processpositive regulation of brassinosteroid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MALENRNTSD DQPAGVMGFF SNGSFFDHHQ QPQLCMSFAD NNIQSEALVV PSIGLIADFS  60
HDTSNGKKAA AHSVESFMNL SPTPASGSGF LSVNNKGTGM QGLSGRKRKR NNERVVEKPK  120
EVIHVRAKRG QATDSHSLAE RVRRERINER LRCLQDLVPG CYKTMGMAVM LDVIINYVRS  180
LQNQIEFLSM KLSAASMYYD FNSELDTTET MPGTNECDAQ DMERMVREGY GGPSYFHSAW  240
SL*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006448451.10.0transcription factor bHLH75 isoform X1
SwissprotA4D9989e-56BH075_ARATH; Transcription factor bHLH75
TrEMBLA0A2H5P5F40.0A0A2H5P5F4_CITUN; Uncharacterized protein
TrEMBLV4UHE40.0V4UHE4_9ROSI; Uncharacterized protein
STRINGXP_006448451.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM140812024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25330.14e-47bHLH family protein
Publications ? help Back to Top
  1. Khan M, et al.
    Interplay between phosphorylation and SUMOylation events determines CESTA protein fate in brassinosteroid signalling.
    Nat Commun, 2014. 5: p. 4687
    [PMID:25134617]
  2. Eremina M, et al.
    Brassinosteroids participate in the control of basal and acquired freezing tolerance of plants.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(40): p. E5982-E5991
    [PMID:27655893]
  3. Pfannebecker KC,Lange M,Rupp O,Becker A
    Seed Plant-Specific Gene Lineages Involved in Carpel Development.
    Mol. Biol. Evol., 2017. 34(4): p. 925-942
    [PMID:28087776]