PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10016463m
Common NameCICLE_v10016463mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 242aa    MW: 26181.9 Da    PI: 9.0011
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10016463mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.3e-202575256
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                     +++GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAa+a++aa+++++g+
  Ciclev10016463m 25 HFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDAAAREFRGA 75
                     69*******.**********8...557*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.8E-322582IPR001471AP2/ERF domain
CDDcd000182.98E-182582No hitNo description
SMARTSM003801.3E-392588IPR001471AP2/ERF domain
PfamPF008474.8E-142574IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-222583IPR016177DNA-binding domain
PROSITE profilePS5103223.8942582IPR001471AP2/ERF domain
PRINTSPR003675.0E-112637IPR001471AP2/ERF domain
PRINTSPR003675.0E-114864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MAPREKASGP VKVNGNSNGI VKEVHFRGVR KRPWGRYAAE IRDPGKKSRV WLGTFDTAEE  60
AARAYDAAAR EFRGAKAKTN FPLPSENVTN KISHNNININ NNNQSPSQSS TIESSSREPA  120
LMIDSSPLDL NLGPACAGGG AGGGFNATIR FPFQPVGGSF GAANQVFYFD PVAAMKSQQY  180
QRLRFDHHRN YNFHAAAVTA VGDGSVQSDS DSSSIVDLNH HDDKPRRVLD IDLNLPPEDF  240
A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-212583261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-212283264ATERF1
3gcc_A3e-212283264ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006449389.11e-179ethylene-responsive transcription factor 4
TrEMBLV4W8U71e-177V4W8U7_9ROSI; Uncharacterized protein
STRINGXP_006449389.11e-178(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.17e-29erf domain protein 9