PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10016466m
Common NameCICLE_v10016466mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 242aa    MW: 27358.5 Da    PI: 7.0341
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10016466mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.69.1e-134996655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
              HLH  6 nerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55
                     + +E++RRd++++ +++L++llP++   psk  ls  + + +A++YIk+L+
  Ciclev10016466m 49 KTIEKNRRDQMKNLYSTLKSLLPNQ---PSKEeLSLPDQVDEAINYIKMLE 96
                     689*********************7...55555***************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.3E-1342114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.1924395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-1147114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.0E-94996IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-549101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.89E-85195No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MFKKLSIAYP IFTKKLDLKM GYLGQSLEAK GSMKRKQCSS SSPTKIERKT IEKNRRDQMK  60
NLYSTLKSLL PNQPSKEELS LPDQVDEAIN YIKMLETKLK ECKKKKESLQ GRERSHACIS  120
DGTEARLMTS SSPKAPEIEI HEMGSNLEVI LTSGVDDQFI FYDVIRILHQ DGAEILNANF  180
SVVGNTIFHV IHAEIRDSMF GFGAAKISER LKGFVSGCAS EGEMQLPELW DFEINPELWE  240
F*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15157EKNRRDQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006447292.11e-180transcription factor bHLH162
RefseqXP_006469875.21e-180transcription factor bHLH162-like
TrEMBLV4U3N51e-178V4U3N5_9ROSI; Uncharacterized protein
STRINGXP_006447292.11e-179(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12782592
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.11e-33bHLH family protein