PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10016477m
Common NameCICLE_v10016477mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 241aa    MW: 26760 Da    PI: 7.9268
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10016477mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox628.7e-2087141256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ +++keq + Lee F+ n++++ +++eeLA++l+L+ rqV vWFqNrRa+ k
  Ciclev10016477m  87 RKKLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSK 141
                      788899***********************************************98 PP
2HD-ZIP_I/II119.12.4e-3887175189
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                      +kk+rlskeq++lLEesF+++++L+p++K+ela++L+l+prqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL++eveeLr+
  Ciclev10016477m  87 RKKLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRA 175
                      69*************************************************************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.6E-2070144IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.7E-1972137IPR009057Homeodomain-like
PROSITE profilePS5007117.62183143IPR001356Homeobox domain
SMARTSM003891.5E-1885147IPR001356Homeobox domain
CDDcd000861.96E-1886144No hitNo description
PfamPF000464.7E-1787141IPR001356Homeobox domain
PROSITE patternPS000270118141IPR017970Homeobox, conserved site
SMARTSM003404.4E-22143186IPR003106Leucine zipper, homeobox-associated
PfamPF021837.9E-10143177IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MAIIPRSSSS LDLTISVPGF SSSDDGDHHH HQQQAGGSAM KDLDINQVPS EDTEWNNWNT  60
ATATTTGSGS MDDEEESCIN VDGGPPRKKL RLSKEQSRLL EESFRHNHTL NPKQKEELAT  120
QLKLKPRQVE VWFQNRRARS KLKQTEMECE YLKRWFGSLT EQNRRLQREV EELRAMKVGP  180
PTVISPHSCE PLPASTLSMC PRCERVTTTA IDKGPTKVTT ASSTPAALSP KVGTPALQSR  240
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135143RRARSKLKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151}.
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006448268.11e-179homeobox-leucine zipper protein HOX3
RefseqXP_006469169.11e-179homeobox-leucine zipper protein HOX3
SwissprotQ0JKX16e-80HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
SwissprotQ9XH386e-80HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBLA0A067FF131e-178A0A067FF13_CITSI; Uncharacterized protein
TrEMBLA0A2H5PQR81e-178A0A2H5PQR8_CITUN; Uncharacterized protein
TrEMBLV4TLZ81e-178V4TLZ8_9ROSI; Uncharacterized protein
STRINGXP_006469169.11e-179(Citrus sinensis)
STRINGXP_006448268.11e-179(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48902747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.14e-75homeobox-leucine zipper protein 17