PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10016491m

Common Name

CICLE_v10016491mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NF-YA

Protein Properties

Length: 239aa MW: 26523.9 Da PI: 9.5807

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10016491m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	104.3	1.1e-32	143	199	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+e+k+ ksrkpylheSRh hAlrR+Rg+gGrF Ciclev10016491m 143 EEPVFVNAKQYHGILRRRQSRAKAESENKV-LKSRKPYLHESRHLHALRRARGCGGRF 199 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.3E-36	141	202	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.605	142	202	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	8.6E-28	144	199	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.5E-23	145	167	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	147	167	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	2.5E-23	176	199	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MSLKLFATSL TSILLVVLPD LSCRFYMRDG LMTSSVHDMS DNSDADEQRK HPESQLQSST 60 PAMGMSHPSI TTPNVQYATH QVGAGHAMAP AAYPYPDPYY RSIFAPYDAQ PYPPQPYGGQ 120 PMVHLQLMGI QQAGVPLPTD AVEEPVFVNA KQYHGILRRR QSRAKAESEN KVLKSRKPYL 180 HESRHLHALR RARGCGGRFL NSKKNQNQQK GMASDDKSQS NLNLNSDKNE IASSDRQS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	5e-21	142	205	1	64	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM472177	2e-53	AM472177.2 Vitis vinifera contig VV78X243821.10, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006448912.1	1e-163	nuclear transcription factor Y subunit A-7 isoform X1
Swissprot	Q84JP1	1e-73	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	V4TNW1	1e-177	V4TNW1_9ROSI; Uncharacterized protein
STRING	XP_006448913.1	1e-178	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4168	27	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	3e-57	nuclear factor Y, subunit A7

Link Out ? help Back to Top
Phytozome	Ciclev10016491m
Entrez Gene	18051681

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]