PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10016617m

Common Name

CICLE_v10016491mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NF-YA

Protein Properties

Length: 221aa MW: 24625.5 Da PI: 9.5896

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10016617m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	104.5	9.6e-33	125	181	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+e+k+ ksrkpylheSRh hAlrR+Rg+gGrF Ciclev10016617m 125 EEPVFVNAKQYHGILRRRQSRAKAESENKV-LKSRKPYLHESRHLHALRRARGCGGRF 181 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.3E-36	123	184	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.605	124	184	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	7.5E-28	126	181	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.1E-23	127	149	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	129	149	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	2.1E-23	158	181	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MNLSCRFYMR DGLMTSSVHD MSDNSDADEQ RKHPESQLQS STPAMGMSHP SITTPNVQYA 60 THQVGAGHAM APAAYPYPDP YYRSIFAPYD AQPYPPQPYG GQPMVHLQLM GIQQAGVPLP 120 TDAVEEPVFV NAKQYHGILR RRQSRAKAES ENKVLKSRKP YLHESRHLHA LRRARGCGGR 180 FLNSKKNQNQ QKGMASDDKS QSNLNLNSDK NEIASSDRQS *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	5e-21	124	187	1	64	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM472177	1e-53	AM472177.2 Vitis vinifera contig VV78X243821.10, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006448912.1	1e-164	nuclear transcription factor Y subunit A-7 isoform X1
Swissprot	Q84JP1	1e-73	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	V4U896	1e-163	V4U896_9ROSI; Uncharacterized protein
STRING	XP_006448913.1	1e-162	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	2e-57	nuclear factor Y, subunit A7

Link Out ? help Back to Top
Phytozome	Ciclev10016617m
Entrez Gene	18051681

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]