PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10016654m

Common Name

CICLE_v10016654mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

FAR1

Protein Properties

Length: 218aa MW: 25199.8 Da PI: 9.6664

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10016654m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	97.2	1.9e-30	48	135	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YA+++GF +r+++ ++s r+g++++r++vC+keg+r+ + ++ +++r++ra+tr gCka+++vkkek+gkw+vt++++eHnH+l+ Ciclev10016654m 48 FYDAYATHMGFIMRVDAFRRSMRDGKVVWRRLVCNKEGFRKLRPRR-SENRKPRAVTREGCKAMIVVKKEKTGKWVVTRFVKEHNHPLV 135 9*****************************************99.9*************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-28	48	135	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MDENPSTGQN EEMMENVNDQ EMAVTKGSLD GEPYLGMEFE SEEAAKVFYD AYATHMGFIM 60 RVDAFRRSMR DGKVVWRRLV CNKEGFRKLR PRRSENRKPR AVTREGCKAM IVVKKEKTGK 120 WVVTRFVKEH NHPLVAIPAN GRRSVLLSQT PDEKDVKIRE LTAELQRERK RSAAYQEQLE 180 MVLRDMENHS HHLSRNIDDI VQSVKQIEAK RIAASHC*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006447969.1	1e-162	protein FAR1-RELATED SEQUENCE 1
Refseq	XP_006492211.1	1e-162	protein FAR1-RELATED SEQUENCE 1
TrEMBL	V4W588	1e-161	V4W588_9ROSI; Uncharacterized protein
STRING	XP_006492211.1	1e-162	(Citrus sinensis)
STRING	XP_006447969.1	1e-162	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13524	22	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	1e-93	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Ciclev10016654m
Entrez Gene	18051657