PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10016655m

Common Name

CICLE_v10016655mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

DBB

Protein Properties

Length: 217aa MW: 23736.8 Da PI: 6.597

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10016655m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.6	1.9e-06	4	47	5	42
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ +e e++ C ++ lC dC + H+ H++ pl Ciclev10016655m 4 QCNGCEAAEAKVLCCADEAALCWDCDRKVHSAnmlakkHQRLPL 47 6****99*******************66888888988775 PP
2	zf-B_box	29.6	1.4e-09	52	94	1	37
zf-B_box 1 seerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 s+++kC+ ++e +fC +++ l+C++C +++H H Ciclev10016655m 52 SQMPKCDICQETTGYFFCLEDRALFCRKCDVAIHTAntyvsgH 94 689******99*******************654455555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.523	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	1.69E-7	3	47	No hit	No description
SMART	SM00336	2.0E-9	4	47	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.001	52	99	IPR000315	B-box-type zinc finger
SMART	SM00336	1.5E-15	52	99	IPR000315	B-box-type zinc finger
Pfam	PF00643	3.0E-7	53	95	IPR000315	B-box-type zinc finger
CDD	cd00021	3.54E-8	55	99	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MRIQCNGCEA AEAKVLCCAD EAALCWDCDR KVHSANMLAK KHQRLPLSHS SSQMPKCDIC 60 QETTGYFFCL EDRALFCRKC DVAIHTANTY VSGHQRFLLT GVKVGLGATE PCVSTTTNKS 120 DSIENASETE SSQPISKRNA SIPTACEANG MLHGQIGRVE TVSAPATSKM PSVTGDTTTV 180 NNIPDWHLDD YLTPTDFSPN YVLMDNVSFS KWFSRR*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ccl.5218	0.0	leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269\|PubMed:18182030, ECO:0000269\|PubMed:18540109, ECO:0000269\|PubMed:18796637, ECO:0000269\|PubMed:21070414, ECO:0000269\|PubMed:21427283}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By light. {ECO:0000269\|PubMed:18182030}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006448008.1	1e-163	B-box zinc finger protein 22 isoform X2
Swissprot	Q9SYM2	9e-65	BBX22_ARATH; B-box zinc finger protein 22
TrEMBL	V4TLB3	1e-162	V4TLB3_9ROSI; Uncharacterized protein
STRING	XP_006448008.1	1e-163	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78600.1	4e-67	light-regulated zinc finger protein 1

Link Out ? help Back to Top
Phytozome	Ciclev10016655m
Entrez Gene	18052585