PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10016707m
Common NameCICLE_v10016707mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HSF
Protein Properties Length: 209aa    MW: 24078.4 Da    PI: 10.1238
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10016707mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind98.95.1e-31321282103
                      HHHHHHHHHC...TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT.TEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
     HSF_DNA-bind   2 Flkklyeile...deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY.gFkkvkdeekkskskekiweFkhksFkkgkk 91 
                      Fl k+y++l+   d+ +k+++sw+++g+ fvv+ + ef++ +LpkyFkh+nf+SF+RQLn+Y gFkk++ ++         weF+h++F++g +
  Ciclev10016707m  32 FLCKTYDLLQerdDDGNKKIVSWNAQGDGFVVWSPAEFSELMLPKYFKHNNFSSFIRQLNTYqGFKKTSPKQ---------WEFRHDKFRRGCR 116
                      99*******97777799*********************************************8899999988.........************* PP

                      XXXXXXXXXXXX CS
     HSF_DNA-bind  92 ellekikrkkse 103
                      +ll +i rkks+
  Ciclev10016707m 117 HLLVEIVRKKSD 128
                      *********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.3E-3421120IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.22E-2628125IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.5E-4128125IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.7E-2832125IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-83558IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-87385IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-88698IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MAKKFLELNN EGTSTNSSTS QSSPRTKNPA PFLCKTYDLL QERDDDGNKK IVSWNAQGDG  60
FVVWSPAEFS ELMLPKYFKH NNFSSFIRQL NTYQGFKKTS PKQWEFRHDK FRRGCRHLLV  120
EIVRKKSDPS VFPAYLKAAS NEGSIASAAG KQHNNHLLLM EENESLKRER LQLQMQIAEF  180
KALEIKLLDS LSQYMGNFNH QNKVRRLC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A6e-152813016125Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006449329.11e-156heat stress transcription factor B-2a isoform X1
TrEMBLV4W8M01e-154V4W8M0_9ROSI; Uncharacterized protein
STRINGXP_006449329.11e-155(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16597712
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.19e-40heat shock factor 4