PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10016721m

Common Name

CICLE_v10016721mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

FAR1

Protein Properties

Length: 208aa MW: 23464.8 Da PI: 7.9269

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10016721m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	90.7	1.9e-28	43	132	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 kfY YA+++GF vr+ + ++s+++g++ r++ C+k+g++ ++k ++ e+++r++ r gCka++ vk+ek+gkw+vt++ ++HnH+l+ Ciclev10016721m 43 KFYMGYARRMGFVVRIMQRRRSRTDGTTLARRLGCNKQGFSPNSKGTNGPEKKPRPSAREGCKATILVKMEKSGKWVVTRFIKDHNHPLV 132 6********************************************9**************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.0E-26	43	132	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MELDEGAAAA DSCVIEKSGE LAGDEILEPY VGMEFDSEDA ARKFYMGYAR RMGFVVRIMQ 60 RRRSRTDGTT LARRLGCNKQ GFSPNSKGTN GPEKKPRPSA REGCKATILV KMEKSGKWVV 120 TRFIKDHNHP LVVTANGYST VGDKDKKIEE LTLELERQEQ LCAAYREKLF NFMNNVEEQT 180 EELSSKIQVI VDNIRKVESE MLKSFLQ*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006447971.1	1e-154	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_006492212.1	1e-154	protein FAR1-RELATED SEQUENCE 5-like
Swissprot	Q9SZL8	4e-26	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2H5PHQ9	1e-153	A0A2H5PHQ9_CITUN; Uncharacterized protein
TrEMBL	V4UG07	1e-153	V4UG07_9ROSI; Uncharacterized protein
STRING	XP_006492212.1	1e-153	(Citrus sinensis)
STRING	XP_006447971.1	1e-153	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3918	28	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12850.1	6e-66	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Ciclev10016721m
Entrez Gene	18051658

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]