PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10016736m

Common Name

CICLE_v10016736mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

FAR1

Protein Properties

Length: 205aa MW: 24305.7 Da PI: 9.1927

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10016736m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.3	9.5e-27	24	114	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +Y++++GF+vr++++++s+ n+ ++ ++fvCskeg+re++ ++++ + + tr gC a+l++ +++ +kw+vtk+ +eHnHel+ Ciclev10016736m 24 EFYVAYGRRTGFTVRIHHNRRSRINNVVIGQDFVCSKEGFREKKYMYRKDR-VlpPPPITREGCPAMLRLALRDGDKWVVTKFIKEHNHELM 114 6****************************************99983333.244899******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.0E-24	24	114	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MRVKGDAEEP YIGLEFKSRD DAREFYVAYG RRTGFTVRIH HNRRSRINNV VIGQDFVCSK 60 EGFREKKYMY RKDRVLPPPP ITREGCPAML RLALRDGDKW VVTKFIKEHN HELMSPSKVP 120 WRGSTKNFIS EDEKDRRIRE LTIELNNERQ RFKRRCAAYQ EQLNMVFKFV EEHTDHLSGR 180 VKDIVDNIRE LEDEQPENSD CKCV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006447974.1	1e-151	protein FAR1-RELATED SEQUENCE 5 isoform X2
Refseq	XP_024948794.1	1e-151	protein FAR1-RELATED SEQUENCE 5-like isoform X2
Refseq	XP_024948795.1	1e-151	protein FAR1-RELATED SEQUENCE 5-like isoform X2
TrEMBL	V4W590	1e-150	V4W590_9ROSI; Uncharacterized protein
STRING	XP_006492213.1	1e-148	(Citrus sinensis)
STRING	XP_006447973.1	1e-148	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	3e-37	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Ciclev10016736m
Entrez Gene	18051660