PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10016787m

Common Name

CICLE_v10016466mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 199aa MW: 22486.9 Da PI: 8.8637

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10016787m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.1	6.5e-13	49	96	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 + +E++RRd++++ +++L++llP++ psk ls + + +A++YIk+L+ Ciclev10016787m 49 KTIEKNRRDQMKNLYSTLKSLLPNQ---PSKEeLSLPDQVDEAINYIKMLE 96 689*******************7...55555*************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	8.51E-14	42	114	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.192	43	95	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-11	47	114	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.3E-5	49	101	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.0E-9	49	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.19E-7	51	95	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MFKKLSIAYP IFTKKLDLKM GYLGQSLEAK GSMKRKQCSS SSPTKIERKT IEKNRRDQMK 60 NLYSTLKSLL PNQPSKEELS LPDQVDEAIN YIKMLETKLK ECKKKKESLQ GRERSHACIS 120 DGTEARLMTS SSPKAPEIEI HEMGSNLEVI LTSGVDDQFI FYDVIRILHQ DGAEILNANF 180 SVVGNTIFHV IHAEVCYN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	51	57	EKNRRDQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006447292.1	1e-141	transcription factor bHLH162
Refseq	XP_006469875.2	1e-141	transcription factor bHLH162-like
TrEMBL	V4UE19	1e-144	V4UE19_9ROSI; Uncharacterized protein
STRING	XP_006447292.1	1e-141	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	3e-31	bHLH family protein

Link Out ? help Back to Top
Phytozome	Ciclev10016787m
Entrez Gene	18053485