PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10016819m
Common NameCICLE_v10016427mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MIKC_MADS
Protein Properties Length: 195aa    MW: 22352.8 Da    PI: 10.2806
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10016819mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.21.6e-312878151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     krien++nrqvtf+kRrng+lKKA+ELSvLCdae+a+i+fss+g+lyeys+
  Ciclev10016819m 28 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEIALIVFSSRGRLYEYSN 78
                     79***********************************************95 PP
2K-box99.64.3e-3396177485
            K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 
                      s++ s +ea+a+ +qqe+akL+ +i+n+q+++R++lGe+L+ L++keL+++e++Lek++++iRskKnell+++ie++qk+  
  Ciclev10016819m  96 SNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKRVS 177
                      4444599************************************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-422079IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.9782080IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-332192IPR002100Transcription factor, MADS-box
CDDcd002651.21E-432194No hitNo description
PRINTSPR004044.8E-332242IPR002100Transcription factor, MADS-box
PROSITE patternPS0035002276IPR002100Transcription factor, MADS-box
PfamPF003191.5E-262976IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-334257IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-335778IPR002100Transcription factor, MADS-box
PfamPF014861.9E-23105177IPR002487Transcription factor, K-box
PROSITE profilePS5129712.791106194IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MAFPNELAAG REELSPKRKM GRGKIEIKRI ENTTNRQVTF CKRRNGLLKK AYELSVLCDA  60
EIALIVFSSR GRLYEYSNNS VKSTIDRYKK ATADTSNTGS ICEANAQFYQ QEAAKLRIQI  120
SNMQNSNRNM LGESLSGLNF KELKNMETRL EKGISRIRSK KNELLFAEIE YMQKRVSKFY  180
LCYLSISSCL RFIL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P5e-212088169Myocyte-specific enhancer factor 2B
1tqe_Q5e-212088169Myocyte-specific enhancer factor 2B
1tqe_R5e-212088169Myocyte-specific enhancer factor 2B
1tqe_S5e-212088169Myocyte-specific enhancer factor 2B
6c9l_A5e-212088169Myocyte-specific enhancer factor 2B
6c9l_B5e-212088169Myocyte-specific enhancer factor 2B
6c9l_C5e-212088169Myocyte-specific enhancer factor 2B
6c9l_D5e-212088169Myocyte-specific enhancer factor 2B
6c9l_E5e-212088169Myocyte-specific enhancer factor 2B
6c9l_F5e-212088169Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.30150.0fruit
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2186100.0AB218610.1 Citrus unshiu CitMADS1 mRNA for MADS-box protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006449577.11e-124floral homeotic protein AGAMOUS
SwissprotQ435852e-97AG_TOBAC; Floral homeotic protein AGAMOUS
TrEMBLV4W9731e-137V4W973_9ROSI; Uncharacterized protein
STRINGXP_006449577.11e-123(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.13e-91MIKC_MADS family protein
Publications ? help Back to Top
  1. Cheung AY,Zhan XY,Wang H,Wu HM
    Organ-specific and Agamous-regulated expression and glycosylation of a pollen tube growth-promoting protein.
    Proc. Natl. Acad. Sci. U.S.A., 1996. 93(9): p. 3853-8
    [PMID:8632979]