PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10016846m
Common NameCICLE_v10016846mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 189aa    MW: 21037.6 Da    PI: 6.523
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10016846mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.12.4e-11960255
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                     r+  + +Er+RR++++  +++L +l+P+ +   p +  s  + L +A++YIk Lq
  Ciclev10016846m  9 RTDRKTIERNRRNQMKALYSTLNSLVPHqR---PMEATSLPDQLDEATKYIKRLQ 60
                     778899**********************66...9999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.76E-12574IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.87E-6564No hitNo description
PROSITE profilePS5088811.579759IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-7960IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-11973IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MENNPSSSRT DRKTIERNRR NQMKALYSTL NSLVPHQRPM EATSLPDQLD EATKYIKRLQ  60
TNLERMKERK ERLMGIEKPD AAAATSSSGN SSGTITTGLR SPQIEIHEMG SALEVVLTTG  120
LDFQFMFIET IRLLHEEGVE IVNASFNVVE DTIFHTIHSK IGDSGSDHDA SARISERLKK  180
FGQDGSAF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.208350.0abscission zone| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006449353.11e-137transcription factor bHLH162
RefseqXP_006449355.11e-137transcription factor bHLH162
TrEMBLA0A2H5N2R81e-136A0A2H5N2R8_CITUN; Uncharacterized protein
TrEMBLV4W8P11e-136V4W8P1_9ROSI; Uncharacterized protein
STRINGXP_006449353.11e-137(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12782592
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.11e-45bHLH family protein