PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10016853m
Common NameCICLE_v10016491mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NF-YA
Protein Properties Length: 189aa    MW: 21095.9 Da    PI: 8.9494
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10016853mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA531.1e-16113148137
        CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkp 37 
                      +ep++VNaKQy++Il+RRq+Rak+e+e+k+  ksrk 
  Ciclev10016853m 113 EEPVFVNAKQYHGILRRRQSRAKAESENKV-LKSRKA 148
                      69****************************.666664 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005215.1E-9111166IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115217.573112147IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.7E-12114148IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860117137IPR018362CCAAT-binding factor, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MRDGLMTSSV HDMSDNSDAD EQRKHPESQL QSSTPAMGMS HPSITTPNVQ YATHQVGAGH  60
AMAPAAYPYP DPYYRSIFAP YDAQPYPPQP YGGQPMLMGI QQAGVPLPTD AVEEPVFVNA  120
KQYHGILRRR QSRAKAESEN KVLKSRKACY KLPSFMSFVR FGFLLDWNVL KPVGLWDCGR  180
SLSNWKLY*
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4721772e-49AM472177.2 Vitis vinifera contig VV78X243821.10, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006448911.11e-103nuclear transcription factor Y subunit A-7 isoform X2
RefseqXP_006468306.11e-103nuclear transcription factor Y subunit A-7 isoform X2
SwissprotQ84JP14e-46NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBLV4UDD21e-139V4UDD2_9ROSI; Uncharacterized protein
STRINGXP_006468304.11e-102(Citrus sinensis)
STRINGXP_006448913.11e-102(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.11e-29nuclear factor Y, subunit A7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]