PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10016895m

Common Name

CICLE_v10016895mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

HD-ZIP

Protein Properties

Length: 180aa MW: 20537.4 Da PI: 6.7699

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10016895m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.8	4.4e-19	16	69	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +R ++t++q++ Le++F+ n++++ +++ eLA +lgL+ rq+ vW+qNrRa+ek Ciclev10016895m 16 SRKRLTQDQVRLLETCFNANQKLQVDRKLELACRLGLPPRQIAVWYQNRRAREK 69 6999************************************************99 PP
2	HD-ZIP_I/II	101.4	7.6e-33	17	107	3	93
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ++rl+++qv+lLE++F++++kL+ +rK ela +Lgl prq+avW+qnrRAR k + +E dy+++++++d++ +en++Le+ev L++elk+ Ciclev10016895m 17 RKRLTQDQVRLLETCFNANQKLQVDRKLELACRLGLPPRQIAVWYQNRRAREKIHTIELDYKTIQQELDNVLAENRKLEQEVGMLKHELKK 107 79*************************************************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.823	11	71	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.72E-18	12	79	IPR009057	Homeodomain-like
SMART	SM00389	3.2E-17	13	75	IPR001356	Homeobox domain
Pfam	PF00046	1.8E-16	16	69	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.8E-18	16	69	IPR009057	Homeodomain-like
CDD	cd00086	1.28E-14	17	71	No hit	No description
PRINTS	PR00031	2.3E-5	42	51	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	46	69	IPR017970	Homeobox, conserved site
PRINTS	PR00031	2.3E-5	51	67	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MDLQFSSENR QPSKLSRKRL TQDQVRLLET CFNANQKLQV DRKLELACRL GLPPRQIAVW 60 YQNRRAREKI HTIELDYKTI QQELDNVLAE NRKLEQEVGM LKHELKKSQQ MLLASNPSAT 120 LLPSVSTSGD NDLTSSSSPL NMTCNWEDTG LLPMDELYSC LIRPQGQPEN HSMNDLSIV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006446710.1	1e-130	homeobox-leucine zipper protein ATHB-52
TrEMBL	V4U775	1e-129	V4U775_9ROSI; Uncharacterized protein
STRING	XP_006446710.1	1e-129	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22993	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53980.1	1e-31	homeobox protein 52

Link Out ? help Back to Top
Phytozome	Ciclev10016895m
Entrez Gene	18051841