PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10016948m

Common Name

CICLE_v10016654mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

FAR1

Protein Properties

Length: 173aa MW: 19723 Da PI: 9.5511

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10016948m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	98	1.1e-30	48	135	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YA+++GF +r+++ ++s r+g++++r++vC+keg+r+ + ++ +++r++ra+tr gCka+++vkkek+gkw+vt++++eHnH+l+ Ciclev10016948m 48 FYDAYATHMGFIMRVDAFRRSMRDGKVVWRRLVCNKEGFRKLRPRR-SENRKPRAVTREGCKAMIVVKKEKTGKWVVTRFVKEHNHPLV 135 9*****************************************99.9*************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.8E-29	48	135	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MDENPSTGQN EEMMENVNDQ EMAVTKGSLD GEPYLGMEFE SEEAAKVFYD AYATHMGFIM 60 RVDAFRRSMR DGKVVWRRLV CNKEGFRKLR PRRSENRKPR AVTREGCKAM IVVKKEKTGK 120 WVVTRFVKEH NHPLVAIPAN GRRSVLLSQT PVSCCTSMYC ICLFIKPVVV LV*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006447969.1	1e-111	protein FAR1-RELATED SEQUENCE 1
Refseq	XP_006492211.1	1e-111	protein FAR1-RELATED SEQUENCE 1
Swissprot	Q9SZL8	2e-30	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	V4UAQ5	1e-125	V4UAQ5_9ROSI; Uncharacterized protein
STRING	XP_006492211.1	1e-110	(Citrus sinensis)
STRING	XP_006447969.1	1e-110	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	5e-63	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Ciclev10016948m
Entrez Gene	18051657

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]