PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10016982m
Common NameCICLE_v10016982mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 169aa    MW: 18593.8 Da    PI: 9.9645
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10016982mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.12.8e-20858256
              AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
                     +y+GVr ++ +gr++AeIrd ++    ++r++lg+f+t+eeAa a++ a+++l+g+
  Ciclev10016982m  8 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPEEAALAYDGAARSLRGA 58
                     69*******.**********883....5*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.80E-29866No hitNo description
Gene3DG3DSA:3.30.730.107.1E-32865IPR001471AP2/ERF domain
PROSITE profilePS5103222.721865IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-22866IPR016177DNA-binding domain
PfamPF008472.8E-13857IPR001471AP2/ERF domain
SMARTSM003805.3E-36871IPR001471AP2/ERF domain
PRINTSPR003674.8E-11920IPR001471AP2/ERF domain
PRINTSPR003674.8E-113147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MASSREGHYR GVRKRPWGRY AAEIRDPWKK TRVWLGTFDT PEEAALAYDG AARSLRGAKA  60
KTNFPAPVTN SLPLDLNAPS DTNTSNQHRW ITPGHHRHQR FGFCEFLQTG VLKEINFADR  120
QATSASAQTD AAVIDGAPVA DNGSTPSFFG IVRRGLPIDL NEPPPLWL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-21870568ATERF1
3gcc_A1e-21870568ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00645PBMTransfer from LOC_Os05g41760Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5449140.0FJ544914.1 Citrus unshiu putative ethylene responsive element binding protein 1 (EREBP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006449387.11e-122ethylene-responsive transcription factor 12
RefseqXP_006467752.11e-122ethylene-responsive transcription factor 12
SwissprotQ94ID63e-50ERF81_ARATH; Ethylene-responsive transcription factor 12
TrEMBLA0A067GG801e-121A0A067GG80_CITSI; Uncharacterized protein
TrEMBLB8YM261e-121B8YM26_CITUN; Putative ethylene responsive element binding protein 1
TrEMBLV4U9J01e-121V4U9J0_9ROSI; Uncharacterized protein
STRINGXP_006467752.11e-122(Citrus sinensis)
STRINGXP_006449387.11e-122(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.14e-50ERF domain protein 12