PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10017004m

Common Name

CICLE_v10016820mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB_related

Protein Properties

Length: 165aa MW: 19025.1 Da PI: 10.5592

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10017004m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.4	1.4e-17	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++l+++++ +G g W++ a+ g++Rt+k+c++rw++yl Ciclev10017004m 15 KGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYL 62 79********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.8E-25	7	65	IPR009057	Homeodomain-like
PROSITE profile	PS51294	21.561	10	66	IPR017930	Myb domain
SMART	SM00717	7.2E-13	14	64	IPR001005	SANT/Myb domain
Pfam	PF00249	1.7E-16	15	62	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	9.8E-23	16	93	IPR009057	Homeodomain-like
CDD	cd00167	3.73E-10	17	62	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.3E-8	66	96	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009740	Biological Process	gibberellic acid mediated signaling pathway
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:0080086	Biological Process	stamen filament development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MDKTPCNSQE AEVRKGPWTM EEDLILINYI ANHGEGVWNS LAKAAGLKRT GKSCRLRWLN 60 YLRPDVKRGN ITPEEQLLIM ELHAKWGNRL VYIYKTTGGP KLQSIYQEGP TMKLRIFGEP 120 ESRSKLSKQK HFQGKVQRPM SKQAQAKCPL LHTRWKIIQH HNIH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	7e-15	12	99	24	110	MYB TRANSFORMING PROTEIN
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ccl.2231	0.0	flower

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: First detected in 15-20 mm buds. Expression increases as flowers develop. {ECO:0000269\|PubMed:1840903}.
Uniprot	TISSUE SPECIFICITY: Expressed only in flowers. {ECO:0000269\|PubMed:1840903}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006446526.1	1e-121	myb-related protein 305 isoform X2
Swissprot	P81391	9e-60	MYB05_ANTMA; Myb-related protein 305
TrEMBL	V4UC01	1e-119	V4UC01_9ROSI; Uncharacterized protein
STRING	XP_006470308.1	2e-60	(Citrus sinensis)
STRING	XP_006446527.1	3e-60	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27810.1	1e-54	myb domain protein 21

Link Out ? help Back to Top
Phytozome	Ciclev10017004m
Entrez Gene	18051076

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]