PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10017006m

Common Name

CICLE_v10017006mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

LBD

Protein Properties

Length: 164aa MW: 18131.3 Da PI: 5.688

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10017006m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	140	8e-44	10	108	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk lrrkC +dCv+apyfp e+p+kf nvhk+FGasnv+kll+++ +++reda++sl+yeAear++dPvyG+vg i+ lq+q+++l+ el Ciclev10017006m 10 PCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQREL 103 7********************************************************************************************* PP DUF260 95 allke 99 +++++ Ciclev10017006m 104 DATNA 108 99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.087	9	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.5E-43	10	107	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MASSSYSNAP CAACKCLRRK CMPDCVFAPY FPPEEPQKFV NVHKIFGASN VSKLLNEVLP 60 HQREDAVNSL AYEAEARLKD PVYGCVGAIS VLQRQVMRLQ RELDATNADL IRYACNEMPP 120 QFGARSDTNE QNSGFYFPSQ WNNNNDGSHE GGESSSMVSL RDS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-66	3	118	4	119	LOB family transfactor Ramosa2.1
5ly0_B	4e-66	3	118	4	119	LOB family transfactor Ramosa2.1
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006470257.1	1e-116	LOB domain-containing protein 25
Refseq	XP_006470258.1	1e-116	LOB domain-containing protein 25
Refseq	XP_006470259.1	1e-116	LOB domain-containing protein 25
Refseq	XP_024047294.1	1e-116	LOB domain-containing protein 25
Refseq	XP_024047295.1	1e-116	LOB domain-containing protein 25
Refseq	XP_024047296.1	1e-116	LOB domain-containing protein 25
Refseq	XP_024047297.1	1e-116	LOB domain-containing protein 25
Swissprot	Q8L8Q3	2e-67	LBD25_ARATH; LOB domain-containing protein 25
TrEMBL	V4UC44	1e-119	V4UC44_9ROSI; Uncharacterized protein
STRING	XP_006446576.1	1e-119	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	9e-70	LOB domain-containing protein 25

Link Out ? help Back to Top
Phytozome	Ciclev10017006m
Entrez Gene	18051056

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]