PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10017104m
Common NameCICLE_v10017104mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family SBP
Protein Properties Length: 144aa    MW: 15866.3 Da    PI: 7.4374
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10017104mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1382.7e-4359135278
                      -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      Cqve+C ad+++ak+yhrrhkvC++h+kapvv v+gl qrfCqqCsrfhelsefD++krsCrrrLa+hnerrrk++a
  Ciclev10017104m  59 CQVENCGADMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHELSEFDDTKRSCRRRLAGHNERRRKSSA 135
                      **************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0375757.3E-601143IPR017238Squamosa promoter-binding protein
Gene3DG3DSA:4.10.1100.102.1E-3452120IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.10356133IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.36E-3957138IPR004333Transcription factor, SBP-box
PfamPF031101.9E-3359132IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009911Biological Processpositive regulation of flower development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0010321Biological Processregulation of vegetative phase change
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MEASRAEGKR SLKEDDQEEE EDDEDSGGGI AGEEDKIKKK GKRGSSSAGA GGATTCVSCQ  60
VENCGADMTD AKKYHRRHKV CDFHAKAPVV RVEGLAQRFC QQCSRFHELS EFDDTKRSCR  120
RRLAGHNERR RKSSADYHGE GSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-3649132184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00290DAPTransfer from AT2G33810Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006449372.11e-99squamosa promoter-binding-like protein 3
SwissprotQ387412e-51SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBLA0A2H5N4M23e-98A0A2H5N4M2_CITUN; Squamosa promoter-binding-like protein
TrEMBLV4U9E23e-98V4U9E2_9ROSI; Squamosa promoter-binding-like protein
STRINGXP_006449372.15e-99(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86828118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.14e-43squamosa promoter binding protein-like 3
Publications ? help Back to Top
  1. Klein J,Saedler H,Huijser P
    A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA.
    Mol. Gen. Genet., 1996. 250(1): p. 7-16
    [PMID:8569690]