PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10017173m
Common NameCICLE_v10017173mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WRKY
Protein Properties Length: 128aa    MW: 14540.9 Da    PI: 9.1826
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10017173mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY70.72.1e-222380259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                     +Dgy+W+KYGqK +k+ +  rsY++C  ++C++kk+ e +++dp+ v i+Y g H h+
  Ciclev10017173m 23 EDGYEWKKYGQKFIKNIRKFRSYFKCQESSCMAKKRAEWCTSDPTNVRIVYDGVHSHT 80
                     7********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182901.57E-211780IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.3E-231780IPR003657WRKY domain
PROSITE profilePS5081118.7281782IPR003657WRKY domain
SMARTSM007741.7E-212281IPR003657WRKY domain
PfamPF031061.8E-192379IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MDQNDGEDAQ EMDRRVHRLV LPEDGYEWKK YGQKFIKNIR KFRSYFKCQE SSCMAKKRAE  60
WCTSDPTNVR IVYDGVHSHT HHGSSPSSAD QPRRGSSNTS SNGNQYNLLT QVFGDQSSNA  120
PPASRRN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006488951.14e-92probable WRKY transcription factor 23
RefseqXP_024047358.14e-92probable WRKY transcription factor 23
TrEMBLA0A067EH108e-92A0A067EH10_CITSI; Uncharacterized protein
TrEMBLV4TYX78e-92V4TYX7_9ROSI; Uncharacterized protein
STRINGXP_006445572.11e-92(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2398844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.21e-13WRKY DNA-binding protein 57