PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10017220m
Common NameCICLE_v10017220mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 117aa    MW: 13773.6 Da    PI: 9.3154
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10017220mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.33.1e-1266108145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++ ++++E+ l+++  ++ G++ W++Ia +++ gRt++++k +w 
  Ciclev10017220m  66 KLEFSEDEETLIAKMYNLVGKR-WSLIAGRIP-GRTAEEIKKYWT 108
                      678*******************.*********.***********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.16361115IPR017930Myb domain
SMARTSM007172.0E-965113IPR001005SANT/Myb domain
PfamPF002491.2E-1067108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-1468109IPR009057Homeodomain-like
SuperFamilySSF466891.64E-968111IPR009057Homeodomain-like
CDDcd001672.92E-868107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MKLQTFKQYA EQVKVHKQTL FNLQIPFEPI SFTIYNIFMA ELHRHTSDDN NSVHSREPKQ  60
PNQYSKLEFS EDEETLIAKM YNLVGKRWSL IAGRIPGRTA EEIKKYWTSR YSSTNE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006469704.19e-53transcription factor CPC-like
RefseqXP_024047396.19e-53transcription factor CPC
TrEMBLV4U4D59e-82V4U4D5_9ROSI; Uncharacterized protein
STRINGXP_006447522.11e-82(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32328194
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46410.12e-17MYB_related family protein