PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10017431m
Common NameCICLE_v10017431mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family EIL
Protein Properties Length: 402aa    MW: 45529 Da    PI: 6.9972
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10017431mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN339.31.4e-126472466
                     ..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
             EIN3 24 lledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemev 66
                     +l++++ a++++k +++++qarr+kms+ QDgiLkYMlk me 
  Ciclev10017431m  6 KLAAQQ-AAQKQKPKQTTDQARRRKMSKGQDGILKYMLKLMEY 47
                     554555.59999*****************************95 PP
2EIN375.91e-2347114112181
                      XXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHH CS
             EIN3 112 yqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelww 181
                      y+a++ ++s++++++  + ++++ l++l D+ lgSLLs lmqhcd pqr++plekgv+pPWWPtG+e+w 
  Ciclev10017431m  47 YEAECSAMSEADNNNR-NGNSQSILQDLEDANLGSLLS-LMQHCDTPQRKYPLEKGVPPPWWPTGNEDWG 114
                      7888889998888755.8889999*************7.9****************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048732.6E-9647No hitNo description
PfamPF048731.6E-2447113No hitNo description
Gene3DG3DSA:1.10.3180.104.7E-2261113IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167683.14E-2568145IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene3DG3DSA:1.10.3180.104.2E-6116149IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MWKYHKLAAQ QAAQKQKPKQ TTDQARRRKM SKGQDGILKY MLKLMEYEAE CSAMSEADNN  60
NRNGNSQSIL QDLEDANLGS LLSLMQHCDT PQRKYPLEKG VPPPWWPTGN EDWGHLRQSK  120
CLQDKMTAEE GAIRLGVLSR EESLIRQPSS ENGTSGITEV PPRVHGNKKN QLLAVVVTTM  180
LLTLMMLWVL FHPKKTGQIN QWIVEPVTSH HNATIHSFQD KERAEKRRRA KRPRVTSSSA  240
DQQPGESLND YQHDESRKTL PDINHSDELL IDYNMQGNQE QNNAVTALRP FNNFSAIPSA  300
DVMATQSVYV DERPAVYPMM QNIELQHVDT RNFCSPPFEF GHSNGGHHSQ IETNVPQVGP  360
EVGGVHVPAF RRNENEITTN GGELPHYINN TFHSEQERTL I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wij_A1e-31671539140ETHYLENE-INSENSITIVE3-like 3 protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224232EKRRRAKRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006494725.10.0ETHYLENE INSENSITIVE 3-like 3 protein
TrEMBLV4U5730.0V4U573_9ROSI; Uncharacterized protein
STRINGXP_006445980.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46582548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73730.16e-60ETHYLENE-INSENSITIVE3-like 3