PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10017466m
Common NameCICLE_v10017466mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRAS
Protein Properties Length: 595aa    MW: 65035.3 Da    PI: 4.8969
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10017466mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS443.41.5e-1352285891374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      lv++L++cAeav++++l+la+a++++++ la +++ +m ++a++f+eALa+r+++    ly    p++  +++ se l +   f+e++P+lkf+
  Ciclev10017466m 228 LVHALMACAEAVQQNNLTLAEAFVKQIRFLAVSQAGAMGKVATHFAEALARRIYG----LY----PQSPIDHSFSELLEM--QFYETCPYLKFA 311
                      689****************************************************....44....444433334444444..5*********** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                      h+taNqaIlea++g++rvH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p+++++++l+++g++La++Ae+++v+fe++ +va++l+d
  Ciclev10017466m 312 HFTANQAILEAFDGKRRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNTDQLQQVGWKLAQLAESIHVEFEYRGFVANSLAD 405
                      ********************************************************************************************** PP

             GRAS 189 leleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                      l+ ++L++kp   +++aVn v++lh+ll++++++++    vL++vk++++++++v+eqea+hn++ Fl+rf+e+l+yys++fdsle ++ + ++
  Ciclev10017466m 406 LDASMLEIKPseVDSVAVNTVFELHKLLAQPGAIDK----VLSVVKNIKADIFTVAEQEANHNGPVFLDRFTESLHYYSTMFDSLEGSVNSPEN 495
                      **********55568*************99999999....************************************************977777 PP

             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                      ++++ E+  lg++i+nvvacega+r+erhetl++Wr r+++aGF p++++++a+kqa++ll+ ++ +dgy+vee++g+l+lgW +rpL+++SaW
  Ciclev10017466m 496 HKAMTEAY-LGNQICNVVACEGADRVERHETLAQWRTRFGSAGFIPAHIGSNAYKQASMLLALFAgGDGYKVEENNGCLTLGWYTRPLIATSAW 588
                      66666665.************************************************************************************* PP

             GRAS 374 r 374
                      +
  Ciclev10017466m 589 K 589
                      8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120418.7E-3441107IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011296.4E-2841114No hitNo description
PROSITE profilePS5098564.467202568IPR005202Transcription factor GRAS
PfamPF035145.3E-133228589IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006808Biological Processregulation of nitrogen utilization
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0010233Biological Processphloem transport
GO:0042176Biological Processregulation of protein catabolic process
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MKREHSQLDP PPPPPPPPSC VARPSGKGKM WEEEQTDGGM DELLAVLGYN VRSSDMVEVA  60
QKIEQLEEAM GAFQADGINH LASDTVHYDP SNLCTWLESM LTEFNPTMPA GLGLDPVPAP  120
SVFDDSSFIA PAESSTITSL DFSHQRVLEE PSTSDYDLKA IPGKAMYGAN NSQNSSNNYL  180
SLSSASASSL SSSTTTRENK RLKTSEFYPP ESTRPIVLAD SQENGIRLVH ALMACAEAVQ  240
QNNLTLAEAF VKQIRFLAVS QAGAMGKVAT HFAEALARRI YGLYPQSPID HSFSELLEMQ  300
FYETCPYLKF AHFTANQAIL EAFDGKRRVH VIDFSMNQGM QWPALMQALA LRPGGPPAFR  360
LTGIGPPAAD NTDQLQQVGW KLAQLAESIH VEFEYRGFVA NSLADLDASM LEIKPSEVDS  420
VAVNTVFELH KLLAQPGAID KVLSVVKNIK ADIFTVAEQE ANHNGPVFLD RFTESLHYYS  480
TMFDSLEGSV NSPENHKAMT EAYLGNQICN VVACEGADRV ERHETLAQWR TRFGSAGFIP  540
AHIGSNAYKQ ASMLLALFAG GDGYKVEENN GCLTLGWYTR PLIATSAWKL AAKR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-6022358814378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00611ChIP-seqTransfer from AT2G01570Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006448223.10.0DELLA protein GAIP-B
SwissprotQ8S4W70.0GAI1_VITVI; DELLA protein GAI1
TrEMBLV4TLV60.0V4TLV6_9ROSI; Uncharacterized protein
STRINGXP_006448223.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83728121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein