PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10017472m

Common Name

CICLE_v10017472mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

M-type_MADS

Protein Properties

Length: 181aa MW: 20216.4 Da PI: 9.1545

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10017472m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	66.1	3.5e-21	10	53	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 ++++ rqvtfskRrng++KKA+EL +LC+a +a+++fs+ gk Ciclev10017472m 10 MVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGK 53 5789999**********************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	4.58E-27	1	72	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	26.198	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	6.5E-34	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00265	9.64E-33	2	71	No hit	No description
PRINTS	PR00404	3.6E-20	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.5E-24	11	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.6E-20	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.6E-20	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MGRRKIEMKM VKDSNSRQVT FSKRRNGLFK KANELATLCA AHIAIVVFSP GGKPFSFGHP 60 SVDVVVQRLL NWEMDPKDET NSHVDVEQGA KVEQLNEQLI DLVNQLEIEK KRGEMLDKAL 120 KAKGLSKYCK KSINDLGLDE LLHMKASLEK LRENLKSHID DMEASSSLLL LKGATKENDG 180 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	9e-16	1	98	1	91	MEF2C
5f28_B	9e-16	1	98	1	91	MEF2C
5f28_C	9e-16	1	98	1	91	MEF2C
5f28_D	9e-16	1	98	1	91	MEF2C
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: During embryogenesis, expressed in the chalazal endosperm. {ECO:0000269\|PubMed:20631316}.
Uniprot	TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269\|PubMed:12949148}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006449659.1	1e-129	agamous-like MADS-box protein AGL29
Swissprot	O64703	1e-46	AGL29_ARATH; Agamous-like MADS-box protein AGL29
TrEMBL	V4W9E1	1e-128	V4W9E1_9ROSI; Uncharacterized protein
STRING	XP_006449659.1	1e-129	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM86	28	390

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34440.1	6e-49	AGAMOUS-like 29

Link Out ? help Back to Top
Phytozome	Ciclev10017472m
Entrez Gene	18053277

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]