PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10017474m

Common Name

CICLE_v10017474mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 166aa MW: 18494.8 Da PI: 6.0162

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10017474m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.4	2.6e-13	14	62	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+ n+ E+ RR ++++ +++L +l+P++ Kls eiL +A+ YI +Lq Ciclev10017474m 14 RAQRNIKEQHRRMHMKDLISQLASLIPSN-----SKLSMPEILDEATSYITHLQ 62 8889**********************8.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.018	12	61	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-13	12	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.57E-14	12	81	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.1E-10	14	62	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.80E-8	17	66	No hit	No description
SMART	SM00353	2.4E-9	18	67	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MAEENSSAAG SSSRAQRNIK EQHRRMHMKD LISQLASLIP SNSKLSMPEI LDEATSYITH 60 LQKNKESLER RRALLKEEDH SEPTVMNITT SGSTLEVNLI CGSNRNFMFH EIISVLEEGA 120 AEIINVTQFN SGDRVIFSVL SKVSPENFDG VGKSLYFQSC REIGY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006446346.1	5e-88	transcription factor bHLH167 isoform X1
TrEMBL	V4U647	1e-118	V4U647_9ROSI; Uncharacterized protein
STRING	XP_006446340.1	1e-118	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2382	21	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10585.1	4e-21	bHLH family protein

Link Out ? help Back to Top
Phytozome	Ciclev10017474m
Entrez Gene	18051289