PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10017526m
Common NameCICLE_v10017526mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 462aa    MW: 52300.4 Da    PI: 8.2445
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10017526mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.66.1e-18201247148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT++Ed  l+++v+q+G++ W+ Ia+ m  gR +kqc++rw+++l
  Ciclev10017526m 201 KGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMT-GRVGKQCRERWYNHL 247
                      799****************************9.*************97 PP
2Myb_DNA-binding50.16.2e-16253295145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +W++eEd +l++a+k+ G++ W+ Iar++  gRt++ +k++w+
  Ciclev10017526m 253 KEAWSEEEDMILIQAHKEVGNR-WAEIARRLI-GRTENTIKNHWN 295
                      579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.037196251IPR017930Myb domain
SuperFamilySSF466891.46E-30198294IPR009057Homeodomain-like
SMARTSM007178.1E-17200249IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-28202255IPR009057Homeodomain-like
PfamPF139215.0E-18204261No hitNo description
CDDcd001672.61E-15204247No hitNo description
SMARTSM007171.3E-15252300IPR001005SANT/Myb domain
PROSITE profilePS5129420.269252302IPR017930Myb domain
CDDcd001673.89E-12255298No hitNo description
Gene3DG3DSA:1.10.10.606.5E-20256300IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010439Biological Processregulation of glucosinolate biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1904095Biological Processnegative regulation of endosperm development
GO:2000692Biological Processnegative regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MELDSSFRDD NPFISSLFSD NLFRSDLGNG FSSLENPSSK GIFFHSHHNN HDYGLISEST  60
FSNPHHLNRF TIEGSSKSPP LGISTMSFDP LKGYSNGFLG TESAYTATPL VLNSTNEVLH  120
GPERRGFWDY SQNFSAHPKP ETPNFQPILM NFQDYESSSA KLPDEVSCVT GENAYNHDQK  180
RNKRIPVKRE RKLPKKNNII KGQWTPQEDR MLIRLVAQHG TKKWSVIAKA MTGRVGKQCR  240
ERWYNHLKPD IKKEAWSEEE DMILIQAHKE VGNRWAEIAR RLIGRTENTI KNHWNATKRR  300
QQSKRKHKET AARSTLLQNY IKNVTARKNN KSNKGINAAP DQDNSANFDA AVVNADNNMM  360
MMPTSSQSQL GITSNFASSL VDQWPQVPVY GHHIEAAIGR LSYENGGGYN FGSSVLDEMP  420
SAGSTVESNF EFELALEIDS NYMPEEVKRE MELMEMAYKG L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-431993012104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178195QKRNKRIPVKRERKLPKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00385DAPTransfer from AT3G27785Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006446542.10.0transcription factor MYB118
TrEMBLV4U1M70.0V4U1M7_9ROSI; Uncharacterized protein
STRINGXP_006446542.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60522643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27785.13e-68myb domain protein 118