PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10017646m
Common NameCICLE_v10017646mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family LBD
Protein Properties Length: 232aa    MW: 26546.4 Da    PI: 9.1443
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10017646mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260111.94.5e-3518116198
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                      aCaaCk++r+kC++dC la+yfpa+++k+f++vhk+FG+snv+k+++++++ee r+++++sl++eA +r++dPv+G +g ++++ ++l+  +++
  Ciclev10017646m  18 ACAACKHQRKKCSEDCKLARYFPANRSKEFQAVHKVFGVSNVTKIVQNANDEEsRQKVVDSLIWEAFWRQKDPVSGPYGEYQRICEELKLYRSQ 111
                      7************************************************77776**********************************999888 PP

           DUF260  94 lallk 98 
                      + +++
  Ciclev10017646m 112 TLMQN 116
                      76655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.13117119IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-3218113IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MMQRNNNNSS TTSSVQSACA ACKHQRKKCS EDCKLARYFP ANRSKEFQAV HKVFGVSNVT  60
KIVQNANDEE SRQKVVDSLI WEAFWRQKDP VSGPYGEYQR ICEELKLYRS QTLMQNHNHR  120
NQNHQLVQLP GQGGMIYRSS SQPLMGWNNG MNTNNGISVS GNEQLNYNNH DNGNNSIVDL  180
DTYSFASHFV QSPKNLKQER EVGTVVIPLQ QQQQQRQQPS INSGFSQQYY IP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-18996288LOB family transfactor Ramosa2.1
5ly0_B3e-18996288LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00128DAPTransfer from AT1G06280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006446738.21e-174LOB domain-containing protein 2
RefseqXP_024047440.11e-174LOB domain-containing protein 2
TrEMBLV4THT31e-173V4THT3_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006446738.11e-173(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105392635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.15e-44LOB domain-containing protein 2