PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10017679m
Common NameCICLE_v10017679mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 124aa    MW: 14891.1 Da    PI: 11.0278
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10017679mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.86.6e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W +eEd +l+ +++++G  +W+  +++ g+ R++k+c++rw +yl
  Ciclev10017679m 14 KGSWAPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYL 61
                     799*****************99**********99************97 PP
2Myb_DNA-binding62.96.4e-2067110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T+eEde ++++++qlG++ W++Ia++++ +Rt++++k++w++
  Ciclev10017679m  67 RGNFTQEEDETIIKLHQQLGNR-WSAIASRLP-RRTDNEIKNHWHT 110
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.046961IPR017930Myb domain
SuperFamilySSF466896.7E-3011108IPR009057Homeodomain-like
SMARTSM007171.1E-101363IPR001005SANT/Myb domain
PfamPF002493.8E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.4E-241568IPR009057Homeodomain-like
CDDcd001672.39E-81661No hitNo description
PROSITE profilePS5129427.51662116IPR017930Myb domain
SMARTSM007176.1E-1766114IPR001005SANT/Myb domain
PfamPF002491.1E-1767110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-2769115IPR009057Homeodomain-like
CDDcd001673.35E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MVKAPGSEKP SLRKGSWAPE EDRKLIAYIR RYGIWNWSEM PKYAGLLRCG KSCRLRWMNY  60
LRPDIRRGNF TQEEDETIIK LHQQLGNRWS AIASRLPRRT DNEIKNHWHT RLSKKRLTKD  120
NQQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-30101153107B-MYB
1h8a_C8e-301011523127MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold stress. {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006449185.29e-88myb-related protein 308
SwissprotQ7XBH49e-55MYB4_ORYSJ; Transcription factor MYB4
TrEMBLV4UE256e-87V4UE25_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006467925.15e-86(Citrus sinensis)
STRINGXP_006449185.11e-87(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.12e-56myb domain protein 14
Publications ? help Back to Top
  1. Park MR, et al.
    Supra-optimal expression of the cold-regulated OsMyb4 transcription factor in transgenic rice changes the complexity of transcriptional network with major effects on stress tolerance and panicle development.
    Plant Cell Environ., 2010. 33(12): p. 2209-30
    [PMID:20807373]
  2. Soltész A, et al.
    The rice Osmyb4 gene enhances tolerance to frost and improves germination under unfavourable conditions in transgenic barley plants.
    J. Appl. Genet., 2012. 53(2): p. 133-43
    [PMID:22246661]